miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 108014 0.66 0.893578
Target:  5'- -cGCCCCCU-CCCGaccu-CCCgACCu -3'
miRNA:   3'- uuCGGGGGAuGGGUauucuGGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 99279 0.68 0.801904
Target:  5'- -cGUCCuCCUcCUCGUccGAUCCCACCg -3'
miRNA:   3'- uuCGGG-GGAuGGGUAuuCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 99127 0.66 0.911951
Target:  5'- cGAGCUCCacacACCuCAUGAgGACCUCACg -3'
miRNA:   3'- -UUCGGGGga--UGG-GUAUU-CUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 96030 0.66 0.899923
Target:  5'- -cGCCCCCgcgUgCGUGggcacGGGCCCCgGCCg -3'
miRNA:   3'- uuCGGGGGau-GgGUAU-----UCUGGGG-UGG- -5'
15885 5' -57.5 NC_004065.1 + 94031 0.67 0.865342
Target:  5'- -uGCUCCCUGCCCA--GGucccgguucccgaAUCCCGCUc -3'
miRNA:   3'- uuCGGGGGAUGGGUauUC-------------UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 92616 0.69 0.793151
Target:  5'- -cGCCCCCUAaaC-UAGGuACgCCCACCu -3'
miRNA:   3'- uuCGGGGGAUggGuAUUC-UG-GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 90679 0.66 0.906048
Target:  5'- uGGCCCCCUugCCGgcgcuGGGCacgaacacgaUCCGCg -3'
miRNA:   3'- uUCGGGGGAugGGUau---UCUG----------GGGUGg -5'
15885 5' -57.5 NC_004065.1 + 90190 0.66 0.887017
Target:  5'- -cGCCCgCCU-CCCG--GGACUCCagGCCg -3'
miRNA:   3'- uuCGGG-GGAuGGGUauUCUGGGG--UGG- -5'
15885 5' -57.5 NC_004065.1 + 90124 0.67 0.880243
Target:  5'- -cGCCgCCgGCCg--GAGGCCCCGCg -3'
miRNA:   3'- uuCGGgGGaUGGguaUUCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 87281 0.67 0.866071
Target:  5'- aGGGCgCCCUGaucgcaauauccCCCAUAuccuGCUCCACCg -3'
miRNA:   3'- -UUCGgGGGAU------------GGGUAUuc--UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 86736 0.7 0.70724
Target:  5'- cGGCCCCCgacgccgccucgGCCCuugAAGcugccgcCCCCGCCg -3'
miRNA:   3'- uUCGGGGGa-----------UGGGua-UUCu------GGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 83456 0.69 0.775242
Target:  5'- --uCCCCUUACCCGc--GACCCCuaGCCc -3'
miRNA:   3'- uucGGGGGAUGGGUauuCUGGGG--UGG- -5'
15885 5' -57.5 NC_004065.1 + 78636 0.7 0.718875
Target:  5'- -cGCCUCCgccACCCAaGAGAUCggCCGCCa -3'
miRNA:   3'- uuCGGGGGa--UGGGUaUUCUGG--GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 75412 0.66 0.893578
Target:  5'- -cGCCCCCgaagaGCUCAc-GGAUgaCCCGCCg -3'
miRNA:   3'- uuCGGGGGa----UGGGUauUCUG--GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 68238 0.67 0.866799
Target:  5'- cAGCCCCCggguuaaaaagaaagUCCGUGaccgggucggccgaaGGaACCCCACCg -3'
miRNA:   3'- uUCGGGGGau-------------GGGUAU---------------UC-UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 66991 0.66 0.906048
Target:  5'- cAAGCCgugaCCagucggcGCCCGUGuacGGGCCCCGCg -3'
miRNA:   3'- -UUCGGg---GGa------UGGGUAU---UCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 66929 0.68 0.810511
Target:  5'- cGGGCCCCCaguuCUCGgugcGGCCCuCGCCg -3'
miRNA:   3'- -UUCGGGGGau--GGGUauu-CUGGG-GUGG- -5'
15885 5' -57.5 NC_004065.1 + 66729 0.66 0.91763
Target:  5'- uGGCgCCCgugCCGUcGGACCCCGgCg -3'
miRNA:   3'- uUCGgGGGaugGGUAuUCUGGGGUgG- -5'
15885 5' -57.5 NC_004065.1 + 64160 0.67 0.858684
Target:  5'- -cGCCUUCgggaCCGUGAGagaccguccgGCCCCGCCg -3'
miRNA:   3'- uuCGGGGGaug-GGUAUUC----------UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 62887 0.67 0.880243
Target:  5'- uGGCCuCCCUGCCCGUcgucaggcaugGGGACaUCCAa- -3'
miRNA:   3'- uUCGG-GGGAUGGGUA-----------UUCUG-GGGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.