miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 62837 0.74 0.51264
Target:  5'- -uGCCCCCcACCCAccccgAAGGCUCCcCCg -3'
miRNA:   3'- uuCGGGGGaUGGGUa----UUCUGGGGuGG- -5'
15885 5' -57.5 NC_004065.1 + 61433 0.78 0.312955
Target:  5'- aGAGgCCCCUACCCAgggccGGCCCgACCc -3'
miRNA:   3'- -UUCgGGGGAUGGGUauu--CUGGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 60192 0.67 0.851103
Target:  5'- cGGUUCCCgaGCCCGuUAAGAUCCCAgagcCCg -3'
miRNA:   3'- uUCGGGGGa-UGGGU-AUUCUGGGGU----GG- -5'
15885 5' -57.5 NC_004065.1 + 57932 0.66 0.887017
Target:  5'- aGAGCCgCCUcCCCc---GGCCCCuCCa -3'
miRNA:   3'- -UUCGGgGGAuGGGuauuCUGGGGuGG- -5'
15885 5' -57.5 NC_004065.1 + 53975 0.67 0.871838
Target:  5'- aGAGCCCCCgaGCUCAcggUAAGGCauaguaaagaggCCGCCa -3'
miRNA:   3'- -UUCGGGGGa-UGGGU---AUUCUGg-----------GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 53403 0.68 0.827259
Target:  5'- -cGUCCCCggACCCGUcacggauAGuCCCCACg -3'
miRNA:   3'- uuCGGGGGa-UGGGUAu------UCuGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 52537 0.66 0.887017
Target:  5'- --aCCCCCggcgGCCCcgccGUGcGcCCCCGCCg -3'
miRNA:   3'- uucGGGGGa---UGGG----UAUuCuGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 50779 0.69 0.74749
Target:  5'- cAGCgCCCUGCCaaucagAAGACCaaaCACCc -3'
miRNA:   3'- uUCGgGGGAUGGgua---UUCUGGg--GUGG- -5'
15885 5' -57.5 NC_004065.1 + 50564 0.72 0.600292
Target:  5'- uGGCCCCCacgcuCCCAUccucGAGcACCCUACUg -3'
miRNA:   3'- uUCGGGGGau---GGGUA----UUC-UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 47523 0.7 0.726577
Target:  5'- -cGCCCCUauugggaccaccGCCCAauUGGGACCaCCGCCc -3'
miRNA:   3'- uuCGGGGGa-----------UGGGU--AUUCUGG-GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 47300 0.7 0.689628
Target:  5'- uGGCCCCggcgucGCCCGUGAGGCCgauCCGCg -3'
miRNA:   3'- uUCGGGGga----UGGGUAUUCUGG---GGUGg -5'
15885 5' -57.5 NC_004065.1 + 45803 1.08 0.003375
Target:  5'- uAAGCCCCCUACCCAUAAGACCCCACCc -3'
miRNA:   3'- -UUCGGGGGAUGGGUAUUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 44191 0.75 0.422072
Target:  5'- -cGCCCCCggACCCGaGAGACuCUCACUa -3'
miRNA:   3'- uuCGGGGGa-UGGGUaUUCUG-GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 42362 0.77 0.35696
Target:  5'- cAGgCUCgUGCCCGU-GGACCCCGCCg -3'
miRNA:   3'- uUCgGGGgAUGGGUAuUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 37312 0.69 0.787833
Target:  5'- aGAGCCCCCggucgGCaCCAgcuuccgucauccgGAGcAgCCCACCg -3'
miRNA:   3'- -UUCGGGGGa----UG-GGUa-------------UUC-UgGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 34340 0.68 0.835384
Target:  5'- -cGCCCCUUACCUAcacagcAAGcACgCCACCc -3'
miRNA:   3'- uuCGGGGGAUGGGUa-----UUC-UGgGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 33869 0.67 0.883656
Target:  5'- gGAGCCCCCagauggcggaguCCCAggcgagggUGAGACcgcggaugccguaCCCGCCg -3'
miRNA:   3'- -UUCGGGGGau----------GGGU--------AUUCUG-------------GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 33198 0.66 0.911951
Target:  5'- -cGCCCgcaCCUGCCgCAgguGAccacgaccCCCCACCg -3'
miRNA:   3'- uuCGGG---GGAUGG-GUauuCU--------GGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 32195 0.67 0.873259
Target:  5'- -cGCCCCUgggACCUGgacGACCCCAa- -3'
miRNA:   3'- uuCGGGGGa--UGGGUauuCUGGGGUgg -5'
15885 5' -57.5 NC_004065.1 + 29574 0.7 0.709186
Target:  5'- uGAGUCCCCUcuugaugaaGCCCuccgggGAGuCCCCgACCa -3'
miRNA:   3'- -UUCGGGGGA---------UGGGua----UUCuGGGG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.