Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15885 | 5' | -57.5 | NC_004065.1 | + | 29205 | 0.66 | 0.887017 |
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Target: 5'- -cGUCCCCgucgcCCCGUccGAuCCCCGCg -3' miRNA: 3'- uuCGGGGGau---GGGUAuuCU-GGGGUGg -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 28587 | 0.67 | 0.863876 |
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Target: 5'- cGAGCCCCC-ACCCGaccAGGAgcugugguuccacuCCCgACCc -3' miRNA: 3'- -UUCGGGGGaUGGGUa--UUCU--------------GGGgUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 27792 | 0.74 | 0.475335 |
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Target: 5'- aGGGCCUCCUGcCCCAgcAGACgUCGCCc -3' miRNA: 3'- -UUCGGGGGAU-GGGUauUCUGgGGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 27089 | 0.69 | 0.784261 |
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Target: 5'- -cGUCCUCUcCCCA--GGACCCCgaacGCCa -3' miRNA: 3'- uuCGGGGGAuGGGUauUCUGGGG----UGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 25272 | 0.66 | 0.911951 |
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Target: 5'- -uGUCCCCgGCCUGUcGGgcguacACCCUACCg -3' miRNA: 3'- uuCGGGGGaUGGGUAuUC------UGGGGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 22516 | 0.69 | 0.778864 |
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Target: 5'- uAAGCCCCacccggacaacgguaUUcCCCGUuccGGAUCCCACCu -3' miRNA: 3'- -UUCGGGG---------------GAuGGGUAu--UCUGGGGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 11935 | 0.66 | 0.887017 |
|
Target: 5'- uGGUgCCCUAUCCuuacGGACCgCUACCc -3' miRNA: 3'- uUCGgGGGAUGGGuau-UCUGG-GGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 2434 | 0.69 | 0.793151 |
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Target: 5'- -cGCCCCgCUAuagcUCCGUccGAGACCCuCAUCg -3' miRNA: 3'- uuCGGGG-GAU----GGGUA--UUCUGGG-GUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 1751 | 0.66 | 0.911951 |
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Target: 5'- --aUCCCCgcgaACCCuacGGGCCUCACCc -3' miRNA: 3'- uucGGGGGa---UGGGuauUCUGGGGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 870 | 0.72 | 0.630127 |
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Target: 5'- uGAGCUaUCCU-CCCcgAGGAUCCCACCc -3' miRNA: 3'- -UUCGG-GGGAuGGGuaUUCUGGGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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