miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 37312 0.69 0.787833
Target:  5'- aGAGCCCCCggucgGCaCCAgcuuccgucauccgGAGcAgCCCACCg -3'
miRNA:   3'- -UUCGGGGGa----UG-GGUa-------------UUC-UgGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 29574 0.7 0.709186
Target:  5'- uGAGUCCCCUcuugaugaaGCCCuccgggGAGuCCCCgACCa -3'
miRNA:   3'- -UUCGGGGGA---------UGGGua----UUCuGGGG-UGG- -5'
15885 5' -57.5 NC_004065.1 + 198227 0.7 0.709186
Target:  5'- cAGGCCCCCcgGCCUGUAgcccAGcACCCCgAUCa -3'
miRNA:   3'- -UUCGGGGGa-UGGGUAU----UC-UGGGG-UGG- -5'
15885 5' -57.5 NC_004065.1 + 78636 0.7 0.718875
Target:  5'- -cGCCUCCgccACCCAaGAGAUCggCCGCCa -3'
miRNA:   3'- uuCGGGGGa--UGGGUaUUCUGG--GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 220957 0.7 0.718875
Target:  5'- aGAGggCCCUACUCGUuAGAUUCCACCa -3'
miRNA:   3'- -UUCggGGGAUGGGUAuUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 194165 0.69 0.766101
Target:  5'- aAGGCUUCCUcgggauCCCcccgggggugGUAAGACUCCGCCg -3'
miRNA:   3'- -UUCGGGGGAu-----GGG----------UAUUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 83456 0.69 0.775242
Target:  5'- --uCCCCUUACCCGc--GACCCCuaGCCc -3'
miRNA:   3'- uucGGGGGAUGGGUauuCUGGGG--UGG- -5'
15885 5' -57.5 NC_004065.1 + 22516 0.69 0.778864
Target:  5'- uAAGCCCCacccggacaacgguaUUcCCCGUuccGGAUCCCACCu -3'
miRNA:   3'- -UUCGGGG---------------GAuGGGUAu--UCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 27089 0.69 0.784261
Target:  5'- -cGUCCUCUcCCCA--GGACCCCgaacGCCa -3'
miRNA:   3'- uuCGGGGGAuGGGUauUCUGGGG----UGG- -5'
15885 5' -57.5 NC_004065.1 + 86736 0.7 0.70724
Target:  5'- cGGCCCCCgacgccgccucgGCCCuugAAGcugccgcCCCCGCCg -3'
miRNA:   3'- uUCGGGGGa-----------UGGGua-UUCu------GGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 114593 0.7 0.703341
Target:  5'- gGAGUgCCCUacgagggcugguaucGCCCucgcUAcGACCCCGCCg -3'
miRNA:   3'- -UUCGgGGGA---------------UGGGu---AUuCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 47300 0.7 0.689628
Target:  5'- uGGCCCCggcgucGCCCGUGAGGCCgauCCGCg -3'
miRNA:   3'- uUCGGGGga----UGGGUAUUCUGG---GGUGg -5'
15885 5' -57.5 NC_004065.1 + 61433 0.78 0.312955
Target:  5'- aGAGgCCCCUACCCAgggccGGCCCgACCc -3'
miRNA:   3'- -UUCgGGGGAUGGGUauu--CUGGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 27792 0.74 0.475335
Target:  5'- aGGGCCUCCUGcCCCAgcAGACgUCGCCc -3'
miRNA:   3'- -UUCGGGGGAU-GGGUauUCUGgGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 62837 0.74 0.51264
Target:  5'- -uGCCCCCcACCCAccccgAAGGCUCCcCCg -3'
miRNA:   3'- uuCGGGGGaUGGGUa----UUCUGGGGuGG- -5'
15885 5' -57.5 NC_004065.1 + 127523 0.73 0.522157
Target:  5'- -uGCCgCCUGCUCAU-GGGCCCCgucGCCg -3'
miRNA:   3'- uuCGGgGGAUGGGUAuUCUGGGG---UGG- -5'
15885 5' -57.5 NC_004065.1 + 50564 0.72 0.600292
Target:  5'- uGGCCCCCacgcuCCCAUccucGAGcACCCUACUg -3'
miRNA:   3'- uUCGGGGGau---GGGUA----UUC-UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 870 0.72 0.630127
Target:  5'- uGAGCUaUCCU-CCCcgAGGAUCCCACCc -3'
miRNA:   3'- -UUCGG-GGGAuGGGuaUUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 123909 0.71 0.679778
Target:  5'- -cGCCCCgUACCCc--AGGCCcaucuCCACCg -3'
miRNA:   3'- uuCGGGGgAUGGGuauUCUGG-----GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 184257 0.71 0.679778
Target:  5'- -cGCCCCCUACCCAUAcauauuGCgUCACg -3'
miRNA:   3'- uuCGGGGGAUGGGUAUuc----UGgGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.