miRNA display CGI


Results 41 - 60 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 29574 0.7 0.709186
Target:  5'- uGAGUCCCCUcuugaugaaGCCCuccgggGAGuCCCCgACCa -3'
miRNA:   3'- -UUCGGGGGA---------UGGGua----UUCuGGGG-UGG- -5'
15885 5' -57.5 NC_004065.1 + 198227 0.7 0.709186
Target:  5'- cAGGCCCCCcgGCCUGUAgcccAGcACCCCgAUCa -3'
miRNA:   3'- -UUCGGGGGa-UGGGUAU----UC-UGGGG-UGG- -5'
15885 5' -57.5 NC_004065.1 + 125695 0.68 0.818965
Target:  5'- aGAGCgCCCUgACCCGaucaucccccUGGGGCgggCCCGCCu -3'
miRNA:   3'- -UUCGgGGGA-UGGGU----------AUUCUG---GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 99279 0.68 0.801904
Target:  5'- -cGUCCuCCUcCUCGUccGAUCCCACCg -3'
miRNA:   3'- uuCGGG-GGAuGGGUAuuCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 152590 0.69 0.793151
Target:  5'- --cCCCCCUcaccACCCcgGAGAUCCUGCg -3'
miRNA:   3'- uucGGGGGA----UGGGuaUUCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 92616 0.69 0.793151
Target:  5'- -cGCCCCCUAaaC-UAGGuACgCCCACCu -3'
miRNA:   3'- uuCGGGGGAUggGuAUUC-UG-GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 37312 0.69 0.787833
Target:  5'- aGAGCCCCCggucgGCaCCAgcuuccgucauccgGAGcAgCCCACCg -3'
miRNA:   3'- -UUCGGGGGa----UG-GGUa-------------UUC-UgGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 27089 0.69 0.784261
Target:  5'- -cGUCCUCUcCCCA--GGACCCCgaacGCCa -3'
miRNA:   3'- uuCGGGGGAuGGGUauUCUGGGG----UGG- -5'
15885 5' -57.5 NC_004065.1 + 22516 0.69 0.778864
Target:  5'- uAAGCCCCacccggacaacgguaUUcCCCGUuccGGAUCCCACCu -3'
miRNA:   3'- -UUCGGGG---------------GAuGGGUAu--UCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 83456 0.69 0.775242
Target:  5'- --uCCCCUUACCCGc--GACCCCuaGCCc -3'
miRNA:   3'- uucGGGGGAUGGGUauuCUGGGG--UGG- -5'
15885 5' -57.5 NC_004065.1 + 194165 0.69 0.766101
Target:  5'- aAGGCUUCCUcgggauCCCcccgggggugGUAAGACUCCGCCg -3'
miRNA:   3'- -UUCGGGGGAu-----GGG----------UAUUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 220957 0.7 0.718875
Target:  5'- aGAGggCCCUACUCGUuAGAUUCCACCa -3'
miRNA:   3'- -UUCggGGGAUGGGUAuUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 78636 0.7 0.718875
Target:  5'- -cGCCUCCgccACCCAaGAGAUCggCCGCCa -3'
miRNA:   3'- uuCGGGGGa--UGGGUaUUCUGG--GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 47523 0.7 0.726577
Target:  5'- -cGCCCCUauugggaccaccGCCCAauUGGGACCaCCGCCc -3'
miRNA:   3'- uuCGGGGGa-----------UGGGU--AUUCUGG-GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 173646 0.7 0.718875
Target:  5'- gGAGCgCUCCgACCCugccGGACCCCGuCCa -3'
miRNA:   3'- -UUCG-GGGGaUGGGuau-UCUGGGGU-GG- -5'
15885 5' -57.5 NC_004065.1 + 109080 0.7 0.709186
Target:  5'- --cCCCCgCUACCC---GGACCCgACCg -3'
miRNA:   3'- uucGGGG-GAUGGGuauUCUGGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 205015 0.7 0.689628
Target:  5'- cGGCCCCUUgccgcGCCCAc-GGACgCCCACa -3'
miRNA:   3'- uUCGGGGGA-----UGGGUauUCUG-GGGUGg -5'
15885 5' -57.5 NC_004065.1 + 44191 0.75 0.422072
Target:  5'- -cGCCCCCggACCCGaGAGACuCUCACUa -3'
miRNA:   3'- uuCGGGGGa-UGGGUaUUCUG-GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 42362 0.77 0.35696
Target:  5'- cAGgCUCgUGCCCGU-GGACCCCGCCg -3'
miRNA:   3'- uUCgGGGgAUGGGUAuUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 179094 0.66 0.91763
Target:  5'- -cGCCgCCCauguuucgcgUGCCCGUGA-ACCCCguGCCu -3'
miRNA:   3'- uuCGG-GGG----------AUGGGUAUUcUGGGG--UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.