miRNA display CGI


Results 61 - 80 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 32195 0.67 0.873259
Target:  5'- -cGCCCCUgggACCUGgacGACCCCAa- -3'
miRNA:   3'- uuCGGGGGa--UGGGUauuCUGGGGUgg -5'
15885 5' -57.5 NC_004065.1 + 143815 0.67 0.880243
Target:  5'- --aCCCCCUGCCCuAUAAcguuaacauGGCCUaCGCCu -3'
miRNA:   3'- uucGGGGGAUGGG-UAUU---------CUGGG-GUGG- -5'
15885 5' -57.5 NC_004065.1 + 11935 0.66 0.887017
Target:  5'- uGGUgCCCUAUCCuuacGGACCgCUACCc -3'
miRNA:   3'- uUCGgGGGAUGGGuau-UCUGG-GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 29205 0.66 0.887017
Target:  5'- -cGUCCCCgucgcCCCGUccGAuCCCCGCg -3'
miRNA:   3'- uuCGGGGGau---GGGUAuuCU-GGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 108014 0.66 0.893578
Target:  5'- -cGCCCCCU-CCCGaccu-CCCgACCu -3'
miRNA:   3'- uuCGGGGGAuGGGUauucuGGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 198929 0.66 0.893578
Target:  5'- -uGCCCgCUccACCCuggcggccAAGGCCgCCGCCa -3'
miRNA:   3'- uuCGGGgGA--UGGGua------UUCUGG-GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 66929 0.68 0.810511
Target:  5'- cGGGCCCCCaguuCUCGgugcGGCCCuCGCCg -3'
miRNA:   3'- -UUCGGGGGau--GGGUauu-CUGGG-GUGG- -5'
15885 5' -57.5 NC_004065.1 + 111501 0.68 0.802771
Target:  5'- cGAGUCCUCgaacgaagaugccgaACCCGagcgacAGGCCCCACCg -3'
miRNA:   3'- -UUCGGGGGa--------------UGGGUau----UCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 42362 0.77 0.35696
Target:  5'- cAGgCUCgUGCCCGU-GGACCCCGCCg -3'
miRNA:   3'- uUCgGGGgAUGGGUAuUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 44191 0.75 0.422072
Target:  5'- -cGCCCCCggACCCGaGAGACuCUCACUa -3'
miRNA:   3'- uuCGGGGGa-UGGGUaUUCUG-GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 205015 0.7 0.689628
Target:  5'- cGGCCCCUUgccgcGCCCAc-GGACgCCCACa -3'
miRNA:   3'- uUCGGGGGA-----UGGGUauUCUG-GGGUGg -5'
15885 5' -57.5 NC_004065.1 + 109080 0.7 0.709186
Target:  5'- --cCCCCgCUACCC---GGACCCgACCg -3'
miRNA:   3'- uucGGGG-GAUGGGuauUCUGGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 173646 0.7 0.718875
Target:  5'- gGAGCgCUCCgACCCugccGGACCCCGuCCa -3'
miRNA:   3'- -UUCG-GGGGaUGGGuau-UCUGGGGU-GG- -5'
15885 5' -57.5 NC_004065.1 + 47523 0.7 0.726577
Target:  5'- -cGCCCCUauugggaccaccGCCCAauUGGGACCaCCGCCc -3'
miRNA:   3'- uuCGGGGGa-----------UGGGU--AUUCUGG-GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 50779 0.69 0.74749
Target:  5'- cAGCgCCCUGCCaaucagAAGACCaaaCACCc -3'
miRNA:   3'- uUCGgGGGAUGGgua---UUCUGGg--GUGG- -5'
15885 5' -57.5 NC_004065.1 + 204327 0.69 0.766101
Target:  5'- cGGGCCCCCggacgACgCCAucUAcuACCUCGCCg -3'
miRNA:   3'- -UUCGGGGGa----UG-GGU--AUucUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 229990 0.69 0.775242
Target:  5'- uAGCCCCCccaucaaaaUACCCccccgGGGGCCCgCGCg -3'
miRNA:   3'- uUCGGGGG---------AUGGGua---UUCUGGG-GUGg -5'
15885 5' -57.5 NC_004065.1 + 183131 0.69 0.775242
Target:  5'- cGGCCCCCUccaGgCCGUGcauCCUCGCCg -3'
miRNA:   3'- uUCGGGGGA---UgGGUAUucuGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 2434 0.69 0.793151
Target:  5'- -cGCCCCgCUAuagcUCCGUccGAGACCCuCAUCg -3'
miRNA:   3'- uuCGGGG-GAU----GGGUA--UUCUGGG-GUGG- -5'
15885 5' -57.5 NC_004065.1 + 179155 0.68 0.799293
Target:  5'- ---gCCCgUGCCCGUcgaucucuccgucaGAGGCCCCGCg -3'
miRNA:   3'- uucgGGGgAUGGGUA--------------UUCUGGGGUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.