miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 183131 0.69 0.775242
Target:  5'- cGGCCCCCUccaGgCCGUGcauCCUCGCCg -3'
miRNA:   3'- uUCGGGGGA---UgGGUAUucuGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 205015 0.7 0.689628
Target:  5'- cGGCCCCUUgccgcGCCCAc-GGACgCCCACa -3'
miRNA:   3'- uUCGGGGGA-----UGGGUauUCUG-GGGUGg -5'
15885 5' -57.5 NC_004065.1 + 66729 0.66 0.91763
Target:  5'- uGGCgCCCgugCCGUcGGACCCCGgCg -3'
miRNA:   3'- uUCGgGGGaugGGUAuUCUGGGGUgG- -5'
15885 5' -57.5 NC_004065.1 + 198929 0.66 0.893578
Target:  5'- -uGCCCgCUccACCCuggcggccAAGGCCgCCGCCa -3'
miRNA:   3'- uuCGGGgGA--UGGGua------UUCUGG-GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 60192 0.67 0.851103
Target:  5'- cGGUUCCCgaGCCCGuUAAGAUCCCAgagcCCg -3'
miRNA:   3'- uUCGGGGGa-UGGGU-AUUCUGGGGU----GG- -5'
15885 5' -57.5 NC_004065.1 + 44191 0.75 0.422072
Target:  5'- -cGCCCCCggACCCGaGAGACuCUCACUa -3'
miRNA:   3'- uuCGGGGGa-UGGGUaUUCUG-GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 108014 0.66 0.893578
Target:  5'- -cGCCCCCU-CCCGaccu-CCCgACCu -3'
miRNA:   3'- uuCGGGGGAuGGGUauucuGGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 42362 0.77 0.35696
Target:  5'- cAGgCUCgUGCCCGU-GGACCCCGCCg -3'
miRNA:   3'- uUCgGGGgAUGGGUAuUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 45803 1.08 0.003375
Target:  5'- uAAGCCCCCUACCCAUAAGACCCCACCc -3'
miRNA:   3'- -UUCGGGGGAUGGGUAUUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 64160 0.67 0.858684
Target:  5'- -cGCCUUCgggaCCGUGAGagaccguccgGCCCCGCCg -3'
miRNA:   3'- uuCGGGGGaug-GGUAUUC----------UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 206383 0.66 0.91763
Target:  5'- cGGGCUCCUgcgucgGCCCG--AGGCCagCCGCCc -3'
miRNA:   3'- -UUCGGGGGa-----UGGGUauUCUGG--GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 2434 0.69 0.793151
Target:  5'- -cGCCCCgCUAuagcUCCGUccGAGACCCuCAUCg -3'
miRNA:   3'- uuCGGGG-GAU----GGGUA--UUCUGGG-GUGG- -5'
15885 5' -57.5 NC_004065.1 + 143815 0.67 0.880243
Target:  5'- --aCCCCCUGCCCuAUAAcguuaacauGGCCUaCGCCu -3'
miRNA:   3'- uucGGGGGAUGGG-UAUU---------CUGGG-GUGG- -5'
15885 5' -57.5 NC_004065.1 + 96030 0.66 0.899923
Target:  5'- -cGCCCCCgcgUgCGUGggcacGGGCCCCgGCCg -3'
miRNA:   3'- uuCGGGGGau-GgGUAU-----UCUGGGG-UGG- -5'
15885 5' -57.5 NC_004065.1 + 1751 0.66 0.911951
Target:  5'- --aUCCCCgcgaACCCuacGGGCCUCACCc -3'
miRNA:   3'- uucGGGGGa---UGGGuauUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 50779 0.69 0.74749
Target:  5'- cAGCgCCCUGCCaaucagAAGACCaaaCACCc -3'
miRNA:   3'- uUCGgGGGAUGGgua---UUCUGGg--GUGG- -5'
15885 5' -57.5 NC_004065.1 + 109080 0.7 0.709186
Target:  5'- --cCCCCgCUACCC---GGACCCgACCg -3'
miRNA:   3'- uucGGGG-GAUGGGuauUCUGGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 78636 0.7 0.718875
Target:  5'- -cGCCUCCgccACCCAaGAGAUCggCCGCCa -3'
miRNA:   3'- uuCGGGGGa--UGGGUaUUCUGG--GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 87281 0.67 0.866071
Target:  5'- aGGGCgCCCUGaucgcaauauccCCCAUAuccuGCUCCACCg -3'
miRNA:   3'- -UUCGgGGGAU------------GGGUAUuc--UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 94031 0.67 0.865342
Target:  5'- -uGCUCCCUGCCCA--GGucccgguucccgaAUCCCGCUc -3'
miRNA:   3'- uuCGGGGGAUGGGUauUC-------------UGGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.