miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 225803 0.66 0.91763
Target:  5'- aGGGUCCCCgcgGCCCAggccuGGuCCUgaagCACCa -3'
miRNA:   3'- -UUCGGGGGa--UGGGUau---UCuGGG----GUGG- -5'
15885 5' -57.5 NC_004065.1 + 186409 0.66 0.91763
Target:  5'- cAGCaCCCCgucCUCuugauGGGCCUCACCg -3'
miRNA:   3'- uUCG-GGGGau-GGGuau--UCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 183836 0.67 0.866071
Target:  5'- -cGCCCCCUAuguggaaaguCCCuauGGGCCgCCAUUa -3'
miRNA:   3'- uuCGGGGGAU----------GGGuauUCUGG-GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 27792 0.74 0.475335
Target:  5'- aGGGCCUCCUGcCCCAgcAGACgUCGCCc -3'
miRNA:   3'- -UUCGGGGGAU-GGGUauUCUGgGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 50564 0.72 0.600292
Target:  5'- uGGCCCCCacgcuCCCAUccucGAGcACCCUACUg -3'
miRNA:   3'- uUCGGGGGau---GGGUA----UUC-UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 226502 0.66 0.911951
Target:  5'- gAGGUCUCgCUcuCCCAggcgAAGGCCCCuCCg -3'
miRNA:   3'- -UUCGGGG-GAu-GGGUa---UUCUGGGGuGG- -5'
15885 5' -57.5 NC_004065.1 + 870 0.72 0.630127
Target:  5'- uGAGCUaUCCU-CCCcgAGGAUCCCACCc -3'
miRNA:   3'- -UUCGG-GGGAuGGGuaUUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 66991 0.66 0.906048
Target:  5'- cAAGCCgugaCCagucggcGCCCGUGuacGGGCCCCGCg -3'
miRNA:   3'- -UUCGGg---GGa------UGGGUAU---UCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 125695 0.68 0.818965
Target:  5'- aGAGCgCCCUgACCCGaucaucccccUGGGGCgggCCCGCCu -3'
miRNA:   3'- -UUCGgGGGA-UGGGU----------AUUCUG---GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 53403 0.68 0.827259
Target:  5'- -cGUCCCCggACCCGUcacggauAGuCCCCACg -3'
miRNA:   3'- uuCGGGGGa-UGGGUAu------UCuGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 34340 0.68 0.835384
Target:  5'- -cGCCCCUUACCUAcacagcAAGcACgCCACCc -3'
miRNA:   3'- uuCGGGGGAUGGGUa-----UUC-UGgGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 162451 0.67 0.851103
Target:  5'- cGAGgCCCCUGCgCuucggcgAAGGCCUCGCg -3'
miRNA:   3'- -UUCgGGGGAUGgGua-----UUCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 94031 0.67 0.865342
Target:  5'- -uGCUCCCUGCCCA--GGucccgguucccgaAUCCCGCUc -3'
miRNA:   3'- uuCGGGGGAUGGGUauUC-------------UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 87281 0.67 0.866071
Target:  5'- aGGGCgCCCUGaucgcaauauccCCCAUAuccuGCUCCACCg -3'
miRNA:   3'- -UUCGgGGGAU------------GGGUAUuc--UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 78636 0.7 0.718875
Target:  5'- -cGCCUCCgccACCCAaGAGAUCggCCGCCa -3'
miRNA:   3'- uuCGGGGGa--UGGGUaUUCUGG--GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 99279 0.68 0.801904
Target:  5'- -cGUCCuCCUcCUCGUccGAUCCCACCg -3'
miRNA:   3'- uuCGGG-GGAuGGGUAuuCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 198227 0.7 0.709186
Target:  5'- cAGGCCCCCcgGCCUGUAgcccAGcACCCCgAUCa -3'
miRNA:   3'- -UUCGGGGGa-UGGGUAU----UC-UGGGG-UGG- -5'
15885 5' -57.5 NC_004065.1 + 29574 0.7 0.709186
Target:  5'- uGAGUCCCCUcuugaugaaGCCCuccgggGAGuCCCCgACCa -3'
miRNA:   3'- -UUCGGGGGA---------UGGGua----UUCuGGGG-UGG- -5'
15885 5' -57.5 NC_004065.1 + 86736 0.7 0.70724
Target:  5'- cGGCCCCCgacgccgccucgGCCCuugAAGcugccgcCCCCGCCg -3'
miRNA:   3'- uUCGGGGGa-----------UGGGua-UUCu------GGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 152590 0.69 0.793151
Target:  5'- --cCCCCCUcaccACCCcgGAGAUCCUGCg -3'
miRNA:   3'- uucGGGGGA----UGGGuaUUCUGGGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.