miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 50564 0.72 0.600292
Target:  5'- uGGCCCCCacgcuCCCAUccucGAGcACCCUACUg -3'
miRNA:   3'- uUCGGGGGau---GGGUA----UUC-UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 127523 0.73 0.522157
Target:  5'- -uGCCgCCUGCUCAU-GGGCCCCgucGCCg -3'
miRNA:   3'- uuCGGgGGAUGGGUAuUCUGGGG---UGG- -5'
15885 5' -57.5 NC_004065.1 + 99279 0.68 0.801904
Target:  5'- -cGUCCuCCUcCUCGUccGAUCCCACCg -3'
miRNA:   3'- uuCGGG-GGAuGGGUAuuCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 125695 0.68 0.818965
Target:  5'- aGAGCgCCCUgACCCGaucaucccccUGGGGCgggCCCGCCu -3'
miRNA:   3'- -UUCGgGGGA-UGGGU----------AUUCUG---GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 53403 0.68 0.827259
Target:  5'- -cGUCCCCggACCCGUcacggauAGuCCCCACg -3'
miRNA:   3'- uuCGGGGGa-UGGGUAu------UCuGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 189539 0.66 0.906048
Target:  5'- uAGCCCgCgagcgGCCU---GGACCCCAgCg -3'
miRNA:   3'- uUCGGGgGa----UGGGuauUCUGGGGUgG- -5'
15885 5' -57.5 NC_004065.1 + 222733 0.66 0.899923
Target:  5'- gGAGCUCCUcGCCCG--GGACCCaACg -3'
miRNA:   3'- -UUCGGGGGaUGGGUauUCUGGGgUGg -5'
15885 5' -57.5 NC_004065.1 + 223764 0.66 0.893578
Target:  5'- cGGCUCCCU-CUCGU----CCCCGCCg -3'
miRNA:   3'- uUCGGGGGAuGGGUAuucuGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 75412 0.66 0.893578
Target:  5'- -cGCCCCCgaagaGCUCAc-GGAUgaCCCGCCg -3'
miRNA:   3'- uuCGGGGGa----UGGGUauUCUG--GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 52537 0.66 0.887017
Target:  5'- --aCCCCCggcgGCCCcgccGUGcGcCCCCGCCg -3'
miRNA:   3'- uucGGGGGa---UGGG----UAUuCuGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 138330 0.66 0.887017
Target:  5'- gAGGCCUCCUcACCCAgggacAGGuuUCGCCu -3'
miRNA:   3'- -UUCGGGGGA-UGGGUau---UCUggGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 90190 0.66 0.887017
Target:  5'- -cGCCCgCCU-CCCG--GGACUCCagGCCg -3'
miRNA:   3'- uuCGGG-GGAuGGGUauUCUGGGG--UGG- -5'
15885 5' -57.5 NC_004065.1 + 57932 0.66 0.887017
Target:  5'- aGAGCCgCCUcCCCc---GGCCCCuCCa -3'
miRNA:   3'- -UUCGGgGGAuGGGuauuCUGGGGuGG- -5'
15885 5' -57.5 NC_004065.1 + 33869 0.67 0.883656
Target:  5'- gGAGCCCCCagauggcggaguCCCAggcgagggUGAGACcgcggaugccguaCCCGCCg -3'
miRNA:   3'- -UUCGGGGGau----------GGGU--------AUUCUG-------------GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 90124 0.67 0.880243
Target:  5'- -cGCCgCCgGCCg--GAGGCCCCGCg -3'
miRNA:   3'- uuCGGgGGaUGGguaUUCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 183836 0.67 0.866071
Target:  5'- -cGCCCCCUAuguggaaaguCCCuauGGGCCgCCAUUa -3'
miRNA:   3'- uuCGGGGGAU----------GGGuauUCUGG-GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 87281 0.67 0.866071
Target:  5'- aGGGCgCCCUGaucgcaauauccCCCAUAuccuGCUCCACCg -3'
miRNA:   3'- -UUCGgGGGAU------------GGGUAUuc--UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 94031 0.67 0.865342
Target:  5'- -uGCUCCCUGCCCA--GGucccgguucccgaAUCCCGCUc -3'
miRNA:   3'- uuCGGGGGAUGGGUauUC-------------UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 162451 0.67 0.851103
Target:  5'- cGAGgCCCCUGCgCuucggcgAAGGCCUCGCg -3'
miRNA:   3'- -UUCgGGGGAUGgGua-----UUCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 34340 0.68 0.835384
Target:  5'- -cGCCCCUUACCUAcacagcAAGcACgCCACCc -3'
miRNA:   3'- uuCGGGGGAUGGGUa-----UUC-UGgGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.