Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15886 | 5' | -53.9 | NC_004065.1 | + | 223570 | 0.66 | 0.987226 |
Target: 5'- -gCGAGAccCUCUCGC-ACAcGCUGCa -3' miRNA: 3'- ggGCUCUcuGAGAGUGaUGU-CGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 140333 | 0.66 | 0.985623 |
Target: 5'- cCCCgguGAGAGACaCUUGCU-CuGCUGCg -3' miRNA: 3'- -GGG---CUCUCUGaGAGUGAuGuCGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 34451 | 0.66 | 0.985623 |
Target: 5'- gCCGGGGGACgcgaaUC-CUGCGGC-GCg -3' miRNA: 3'- gGGCUCUCUGag---AGuGAUGUCGaCGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 166021 | 0.66 | 0.985623 |
Target: 5'- aCgCGGGAGGCcgUCACcgucUGCAGUUGCa -3' miRNA: 3'- -GgGCUCUCUGagAGUG----AUGUCGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 77558 | 0.66 | 0.98387 |
Target: 5'- aCCGAG-GGCUCguUCGC-GCGGgUGCUc -3' miRNA: 3'- gGGCUCuCUGAG--AGUGaUGUCgACGA- -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 205479 | 0.66 | 0.977635 |
Target: 5'- -aCGAGGGGCUCgucucCGCUGCcgucgucGCUGCc -3' miRNA: 3'- ggGCUCUCUGAGa----GUGAUGu------CGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 171939 | 0.67 | 0.975458 |
Target: 5'- -aCGAGAGGgUCUCGCgcaaggcgggcggugGCGGCgGCg -3' miRNA: 3'- ggGCUCUCUgAGAGUGa--------------UGUCGaCGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 96933 | 0.67 | 0.974954 |
Target: 5'- aCCGuuAGACUCgCGCUGCGccucuccccgucuGCUGCc -3' miRNA: 3'- gGGCucUCUGAGaGUGAUGU-------------CGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 195480 | 0.67 | 0.969784 |
Target: 5'- gUCUGAGucGCUCUCGCUgucGCGGgaGCc -3' miRNA: 3'- -GGGCUCucUGAGAGUGA---UGUCgaCGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 12832 | 0.67 | 0.966775 |
Target: 5'- aCCG-GcGGCUUUCGCUGCA-CUGCg -3' miRNA: 3'- gGGCuCuCUGAGAGUGAUGUcGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 53827 | 0.67 | 0.966775 |
Target: 5'- aCCGucAGACUCUgAa-ACAGCUGCc -3' miRNA: 3'- gGGCucUCUGAGAgUgaUGUCGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 184375 | 0.67 | 0.963561 |
Target: 5'- uCCCGGGGGuCUCaUUuCUAUAGCUGg- -3' miRNA: 3'- -GGGCUCUCuGAG-AGuGAUGUCGACga -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 89019 | 0.68 | 0.960136 |
Target: 5'- -aCGAGGuuGugUCUCAg-GCAGCUGCc -3' miRNA: 3'- ggGCUCU--CugAGAGUgaUGUCGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 62821 | 0.68 | 0.956495 |
Target: 5'- aCCCGAGuGACUUUCAgUcgcGCGGagUGCg -3' miRNA: 3'- -GGGCUCuCUGAGAGUgA---UGUCg-ACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 210681 | 0.68 | 0.956495 |
Target: 5'- uCCCGAGAGAC-CUCcGCgaugUAGCgUGCg -3' miRNA: 3'- -GGGCUCUCUGaGAG-UGau--GUCG-ACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 77518 | 0.68 | 0.94855 |
Target: 5'- gCCCGAG-GA-----GCUGCGGCUGCUg -3' miRNA: 3'- -GGGCUCuCUgagagUGAUGUCGACGA- -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 28662 | 0.68 | 0.94855 |
Target: 5'- cCCCGGcGAGGCgcagCUCGCgcaGCAGUUcGCg -3' miRNA: 3'- -GGGCU-CUCUGa---GAGUGa--UGUCGA-CGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 35212 | 0.69 | 0.939697 |
Target: 5'- uCUCGGaGGACcgCUCGCUACAGCgGUa -3' miRNA: 3'- -GGGCUcUCUGa-GAGUGAUGUCGaCGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 199923 | 0.69 | 0.934924 |
Target: 5'- gCCGGGGcugcaGCUCUCGCUACcGCUGg- -3' miRNA: 3'- gGGCUCUc----UGAGAGUGAUGuCGACga -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 203163 | 0.69 | 0.929919 |
Target: 5'- aCCCGAGGaccGuCUCUCgACUucCAGCUGUg -3' miRNA: 3'- -GGGCUCU---CuGAGAG-UGAu-GUCGACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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