miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15886 5' -53.9 NC_004065.1 + 12832 0.67 0.966775
Target:  5'- aCCG-GcGGCUUUCGCUGCA-CUGCg -3'
miRNA:   3'- gGGCuCuCUGAGAGUGAUGUcGACGa -5'
15886 5' -53.9 NC_004065.1 + 28662 0.68 0.94855
Target:  5'- cCCCGGcGAGGCgcagCUCGCgcaGCAGUUcGCg -3'
miRNA:   3'- -GGGCU-CUCUGa---GAGUGa--UGUCGA-CGa -5'
15886 5' -53.9 NC_004065.1 + 34451 0.66 0.985623
Target:  5'- gCCGGGGGACgcgaaUC-CUGCGGC-GCg -3'
miRNA:   3'- gGGCUCUCUGag---AGuGAUGUCGaCGa -5'
15886 5' -53.9 NC_004065.1 + 35212 0.69 0.939697
Target:  5'- uCUCGGaGGACcgCUCGCUACAGCgGUa -3'
miRNA:   3'- -GGGCUcUCUGa-GAGUGAUGUCGaCGa -5'
15886 5' -53.9 NC_004065.1 + 44200 1.11 0.005303
Target:  5'- aCCCGAGAGACUCUCACUACAGCUGCUa -3'
miRNA:   3'- -GGGCUCUCUGAGAGUGAUGUCGACGA- -5'
15886 5' -53.9 NC_004065.1 + 53827 0.67 0.966775
Target:  5'- aCCGucAGACUCUgAa-ACAGCUGCc -3'
miRNA:   3'- gGGCucUCUGAGAgUgaUGUCGACGa -5'
15886 5' -53.9 NC_004065.1 + 62821 0.68 0.956495
Target:  5'- aCCCGAGuGACUUUCAgUcgcGCGGagUGCg -3'
miRNA:   3'- -GGGCUCuCUGAGAGUgA---UGUCg-ACGa -5'
15886 5' -53.9 NC_004065.1 + 74777 0.71 0.859748
Target:  5'- uUCCGcAGGGAgUCUCGCgGCAGC-GCUc -3'
miRNA:   3'- -GGGC-UCUCUgAGAGUGaUGUCGaCGA- -5'
15886 5' -53.9 NC_004065.1 + 77518 0.68 0.94855
Target:  5'- gCCCGAG-GA-----GCUGCGGCUGCUg -3'
miRNA:   3'- -GGGCUCuCUgagagUGAUGUCGACGA- -5'
15886 5' -53.9 NC_004065.1 + 77558 0.66 0.98387
Target:  5'- aCCGAG-GGCUCguUCGC-GCGGgUGCUc -3'
miRNA:   3'- gGGCUCuCUGAG--AGUGaUGUCgACGA- -5'
15886 5' -53.9 NC_004065.1 + 89019 0.68 0.960136
Target:  5'- -aCGAGGuuGugUCUCAg-GCAGCUGCc -3'
miRNA:   3'- ggGCUCU--CugAGAGUgaUGUCGACGa -5'
15886 5' -53.9 NC_004065.1 + 96933 0.67 0.974954
Target:  5'- aCCGuuAGACUCgCGCUGCGccucuccccgucuGCUGCc -3'
miRNA:   3'- gGGCucUCUGAGaGUGAUGU-------------CGACGa -5'
15886 5' -53.9 NC_004065.1 + 107236 0.69 0.929919
Target:  5'- gCgCGAGAuGACUCUCACcaucaUGCGGC-GCg -3'
miRNA:   3'- -GgGCUCU-CUGAGAGUG-----AUGUCGaCGa -5'
15886 5' -53.9 NC_004065.1 + 109344 0.71 0.87449
Target:  5'- gCUGGGAGACauguacuucgUCUCGCgcgACAcGCUGCg -3'
miRNA:   3'- gGGCUCUCUG----------AGAGUGa--UGU-CGACGa -5'
15886 5' -53.9 NC_004065.1 + 130332 0.7 0.895003
Target:  5'- uCCCGGGAG-CUCUCGCUcuuugucaccggAC-GCUGUc -3'
miRNA:   3'- -GGGCUCUCuGAGAGUGA------------UGuCGACGa -5'
15886 5' -53.9 NC_004065.1 + 140333 0.66 0.985623
Target:  5'- cCCCgguGAGAGACaCUUGCU-CuGCUGCg -3'
miRNA:   3'- -GGG---CUCUCUGaGAGUGAuGuCGACGa -5'
15886 5' -53.9 NC_004065.1 + 158809 0.69 0.918647
Target:  5'- gCCCGAucuccgacuucagGAGGCUCgu-CUucaGCAGCUGCg -3'
miRNA:   3'- -GGGCU-------------CUCUGAGaguGA---UGUCGACGa -5'
15886 5' -53.9 NC_004065.1 + 166021 0.66 0.985623
Target:  5'- aCgCGGGAGGCcgUCACcgucUGCAGUUGCa -3'
miRNA:   3'- -GgGCUCUCUGagAGUG----AUGUCGACGa -5'
15886 5' -53.9 NC_004065.1 + 171939 0.67 0.975458
Target:  5'- -aCGAGAGGgUCUCGCgcaaggcgggcggugGCGGCgGCg -3'
miRNA:   3'- ggGCUCUCUgAGAGUGa--------------UGUCGaCGa -5'
15886 5' -53.9 NC_004065.1 + 184375 0.67 0.963561
Target:  5'- uCCCGGGGGuCUCaUUuCUAUAGCUGg- -3'
miRNA:   3'- -GGGCUCUCuGAG-AGuGAUGUCGACga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.