Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15886 | 5' | -53.9 | NC_004065.1 | + | 74777 | 0.71 | 0.859748 |
Target: 5'- uUCCGcAGGGAgUCUCGCgGCAGC-GCUc -3' miRNA: 3'- -GGGC-UCUCUgAGAGUGaUGUCGaCGA- -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 223570 | 0.66 | 0.987226 |
Target: 5'- -gCGAGAccCUCUCGC-ACAcGCUGCa -3' miRNA: 3'- ggGCUCUcuGAGAGUGaUGU-CGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 140333 | 0.66 | 0.985623 |
Target: 5'- cCCCgguGAGAGACaCUUGCU-CuGCUGCg -3' miRNA: 3'- -GGG---CUCUCUGaGAGUGAuGuCGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 77558 | 0.66 | 0.98387 |
Target: 5'- aCCGAG-GGCUCguUCGC-GCGGgUGCUc -3' miRNA: 3'- gGGCUCuCUGAG--AGUGaUGUCgACGA- -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 96933 | 0.67 | 0.974954 |
Target: 5'- aCCGuuAGACUCgCGCUGCGccucuccccgucuGCUGCc -3' miRNA: 3'- gGGCucUCUGAGaGUGAUGU-------------CGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 195480 | 0.67 | 0.969784 |
Target: 5'- gUCUGAGucGCUCUCGCUgucGCGGgaGCc -3' miRNA: 3'- -GGGCUCucUGAGAGUGA---UGUCgaCGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 184375 | 0.67 | 0.963561 |
Target: 5'- uCCCGGGGGuCUCaUUuCUAUAGCUGg- -3' miRNA: 3'- -GGGCUCUCuGAG-AGuGAUGUCGACga -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 77518 | 0.68 | 0.94855 |
Target: 5'- gCCCGAG-GA-----GCUGCGGCUGCUg -3' miRNA: 3'- -GGGCUCuCUgagagUGAUGUCGACGA- -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 35212 | 0.69 | 0.939697 |
Target: 5'- uCUCGGaGGACcgCUCGCUACAGCgGUa -3' miRNA: 3'- -GGGCUcUCUGa-GAGUGAUGUCGaCGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 203163 | 0.69 | 0.929919 |
Target: 5'- aCCCGAGGaccGuCUCUCgACUucCAGCUGUg -3' miRNA: 3'- -GGGCUCU---CuGAGAG-UGAu-GUCGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 130332 | 0.7 | 0.895003 |
Target: 5'- uCCCGGGAG-CUCUCGCUcuuugucaccggAC-GCUGUc -3' miRNA: 3'- -GGGCUCUCuGAGAGUGA------------UGuCGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 210681 | 0.68 | 0.956495 |
Target: 5'- uCCCGAGAGAC-CUCcGCgaugUAGCgUGCg -3' miRNA: 3'- -GGGCUCUCUGaGAG-UGau--GUCG-ACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 62821 | 0.68 | 0.956495 |
Target: 5'- aCCCGAGuGACUUUCAgUcgcGCGGagUGCg -3' miRNA: 3'- -GGGCUCuCUGAGAGUgA---UGUCg-ACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 28662 | 0.68 | 0.94855 |
Target: 5'- cCCCGGcGAGGCgcagCUCGCgcaGCAGUUcGCg -3' miRNA: 3'- -GGGCU-CUCUGa---GAGUGa--UGUCGA-CGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 199923 | 0.69 | 0.934924 |
Target: 5'- gCCGGGGcugcaGCUCUCGCUACcGCUGg- -3' miRNA: 3'- gGGCUCUc----UGAGAGUGAUGuCGACga -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 107236 | 0.69 | 0.929919 |
Target: 5'- gCgCGAGAuGACUCUCACcaucaUGCGGC-GCg -3' miRNA: 3'- -GgGCUCU-CUGAGAGUG-----AUGUCGaCGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 158809 | 0.69 | 0.918647 |
Target: 5'- gCCCGAucuccgacuucagGAGGCUCgu-CUucaGCAGCUGCg -3' miRNA: 3'- -GGGCU-------------CUCUGAGaguGA---UGUCGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 205218 | 0.7 | 0.888385 |
Target: 5'- aCCCGAaaGGGCUCUCGCUcugcauCGGCaUGCg -3' miRNA: 3'- -GGGCUc-UCUGAGAGUGAu-----GUCG-ACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 109344 | 0.71 | 0.87449 |
Target: 5'- gCUGGGAGACauguacuucgUCUCGCgcgACAcGCUGCg -3' miRNA: 3'- gGGCUCUCUG----------AGAGUGa--UGU-CGACGa -5' |
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15886 | 5' | -53.9 | NC_004065.1 | + | 34451 | 0.66 | 0.985623 |
Target: 5'- gCCGGGGGACgcgaaUC-CUGCGGC-GCg -3' miRNA: 3'- gGGCUCUCUGag---AGuGAUGUCGaCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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