miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15888 3' -62.4 NC_004065.1 + 160891 0.66 0.725037
Target:  5'- aGCUUCCCCagcaCCUUGUCGGCGCGccGCGc- -3'
miRNA:   3'- -CGGAGGGG----GGGAUGGCCGCGU--CGUuu -5'
15888 3' -62.4 NC_004065.1 + 78563 0.66 0.715665
Target:  5'- uCCUCUCCCUCU-CCGGagcgacaGUGGCAAc -3'
miRNA:   3'- cGGAGGGGGGGAuGGCCg------CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 172294 0.66 0.715665
Target:  5'- uCCUCCCCUCCUcucGCC--CGCGGUGAAu -3'
miRNA:   3'- cGGAGGGGGGGA---UGGccGCGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 82246 0.66 0.714724
Target:  5'- uCCUCCCCUCCUccagcauccgcuuGCCGaucuUGCGGCAc- -3'
miRNA:   3'- cGGAGGGGGGGA-------------UGGCc---GCGUCGUuu -5'
15888 3' -62.4 NC_004065.1 + 89287 0.66 0.706228
Target:  5'- uCCUCCaCCuugCCCacguugACCGaGCGCGGCAGc -3'
miRNA:   3'- cGGAGG-GG---GGGa-----UGGC-CGCGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 141652 0.66 0.706228
Target:  5'- gGCCUacaCCgCCaCCUUGCUGG-GCAGCGAc -3'
miRNA:   3'- -CGGA---GG-GG-GGGAUGGCCgCGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 80103 0.66 0.705281
Target:  5'- cGCCUCCUgCCgaGCCGcGCGCcccucauccaaccGGCAc- -3'
miRNA:   3'- -CGGAGGGgGGgaUGGC-CGCG-------------UCGUuu -5'
15888 3' -62.4 NC_004065.1 + 197511 0.66 0.696736
Target:  5'- gGUCUCCgagggaCCCgGCCGcGCGCGGUAGAa -3'
miRNA:   3'- -CGGAGGgg----GGGaUGGC-CGCGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 96951 0.66 0.687195
Target:  5'- cGCCUCUCCCCgucugCUGCCGcGCcuGCuGCGc- -3'
miRNA:   3'- -CGGAGGGGGG-----GAUGGC-CG--CGuCGUuu -5'
15888 3' -62.4 NC_004065.1 + 28656 0.66 0.677613
Target:  5'- gGCa--CCCCCCgGCgaGGCGCAGCu-- -3'
miRNA:   3'- -CGgagGGGGGGaUGg-CCGCGUCGuuu -5'
15888 3' -62.4 NC_004065.1 + 82674 0.66 0.677613
Target:  5'- uGCCUCCUggCCgagaGGCGCAGCAu- -3'
miRNA:   3'- -CGGAGGGggGGauggCCGCGUCGUuu -5'
15888 3' -62.4 NC_004065.1 + 138703 0.66 0.677613
Target:  5'- gGCCUCaaggagCUCCUCUAgCGGgGCAGCu-- -3'
miRNA:   3'- -CGGAG------GGGGGGAUgGCCgCGUCGuuu -5'
15888 3' -62.4 NC_004065.1 + 115186 0.66 0.667999
Target:  5'- cGUCUCCuCUUCCUGCCGGaGuCGGCGc- -3'
miRNA:   3'- -CGGAGG-GGGGGAUGGCCgC-GUCGUuu -5'
15888 3' -62.4 NC_004065.1 + 122257 0.66 0.667999
Target:  5'- gGCgUCCugaaCCCCCcGCCGGC-CAGCu-- -3'
miRNA:   3'- -CGgAGG----GGGGGaUGGCCGcGUCGuuu -5'
15888 3' -62.4 NC_004065.1 + 42723 0.66 0.667999
Target:  5'- uCCUCCgCCCCagugAUCGcaGCGCGGCGGc -3'
miRNA:   3'- cGGAGGgGGGGa---UGGC--CGCGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 92364 0.66 0.667999
Target:  5'- gGUCUCguagcaCCCCCUAgCGGaagaCGCAGCAc- -3'
miRNA:   3'- -CGGAGg-----GGGGGAUgGCC----GCGUCGUuu -5'
15888 3' -62.4 NC_004065.1 + 125589 0.66 0.667999
Target:  5'- uGCUUCgCCUCgUugGCCGuGCGCGGCGGGu -3'
miRNA:   3'- -CGGAGgGGGGgA--UGGC-CGCGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 150496 0.67 0.658358
Target:  5'- cGCCUUCUCCCgCUcgGCCGuGCGUaccucGGCGAu -3'
miRNA:   3'- -CGGAGGGGGG-GA--UGGC-CGCG-----UCGUUu -5'
15888 3' -62.4 NC_004065.1 + 135805 0.67 0.658358
Target:  5'- gGCgCUCUCCUCCgaucuucAUCGGCGuCGGCGAu -3'
miRNA:   3'- -CG-GAGGGGGGGa------UGGCCGC-GUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 26168 0.67 0.648698
Target:  5'- aGCCgUCCuauuCCCCgUGCCGGCGCGu---- -3'
miRNA:   3'- -CGG-AGG----GGGGgAUGGCCGCGUcguuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.