Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15888 | 3' | -62.4 | NC_004065.1 | + | 188534 | 0.67 | 0.62935 |
Target: 5'- cGCgCUCCCCguCCCgacgccCCGGCGCAcGCu-- -3' miRNA: 3'- -CG-GAGGGG--GGGau----GGCCGCGU-CGuuu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 89567 | 0.67 | 0.647731 |
Target: 5'- aUCUCCCCCCgUcACCuuacuucGGCcGCGGCAAc -3' miRNA: 3'- cGGAGGGGGGgA-UGG-------CCG-CGUCGUUu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 205403 | 0.67 | 0.636124 |
Target: 5'- cGCCUCCUCaaCUggcgcuuucgcaacACCGGCgGCGGCGGu -3' miRNA: 3'- -CGGAGGGGggGA--------------UGGCCG-CGUCGUUu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 65419 | 0.67 | 0.619676 |
Target: 5'- aGCCUCUUCCCC-GCCuGCgaGCGGCGGc -3' miRNA: 3'- -CGGAGGGGGGGaUGGcCG--CGUCGUUu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 125354 | 0.67 | 0.619676 |
Target: 5'- cGCCUCgUgaCCCU-CCGGCGCGcGCAc- -3' miRNA: 3'- -CGGAGgGg-GGGAuGGCCGCGU-CGUuu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 94086 | 0.67 | 0.62935 |
Target: 5'- uGCCUCUCgCCUUucGCuCGGCGCuGCGu- -3' miRNA: 3'- -CGGAGGGgGGGA--UG-GCCGCGuCGUuu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 142414 | 0.67 | 0.639027 |
Target: 5'- gGCCaUCUUUCgCCUGCCGGCGCgccGGCu-- -3' miRNA: 3'- -CGG-AGGGGG-GGAUGGCCGCG---UCGuuu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 26168 | 0.67 | 0.648698 |
Target: 5'- aGCCgUCCuauuCCCCgUGCCGGCGCGu---- -3' miRNA: 3'- -CGG-AGG----GGGGgAUGGCCGCGUcguuu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 131361 | 0.68 | 0.561072 |
Target: 5'- gGCgUCCCCCCCgucagcaACCGcGCGUacguacgAGCGAc -3' miRNA: 3'- -CGgAGGGGGGGa------UGGC-CGCG-------UCGUUu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 165119 | 0.68 | 0.600359 |
Target: 5'- gGCgUCCCgCCCggcgACUGGCGCcGCu-- -3' miRNA: 3'- -CGgAGGGgGGGa---UGGCCGCGuCGuuu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 174101 | 0.68 | 0.571555 |
Target: 5'- gGCUUCUCCgacUUCUGCCGGCGCGGa--- -3' miRNA: 3'- -CGGAGGGG---GGGAUGGCCGCGUCguuu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 159918 | 0.68 | 0.571555 |
Target: 5'- cGCCgCCgCCgCUGCCGGUGCuGCu-- -3' miRNA: 3'- -CGGaGGgGGgGAUGGCCGCGuCGuuu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 223781 | 0.68 | 0.597467 |
Target: 5'- cGCCgcacgacaggacuaCCUCCaGCCGGUGCGGCAGAu -3' miRNA: 3'- -CGGagg-----------GGGGGaUGGCCGCGUCGUUU- -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 78857 | 0.68 | 0.562023 |
Target: 5'- aCCUCUCCCCCUacgggaacgACCaGGUGUcGCGGAg -3' miRNA: 3'- cGGAGGGGGGGA---------UGG-CCGCGuCGUUU- -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 151207 | 0.68 | 0.552535 |
Target: 5'- uGCCUCCUgaUCaCCgguaccGCCGGCGCGGgGAAg -3' miRNA: 3'- -CGGAGGG--GG-GGa-----UGGCCGCGUCgUUU- -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 65308 | 0.69 | 0.543095 |
Target: 5'- uCCUUCCCCgCguggugggACCGGCGgCGGCGGc -3' miRNA: 3'- cGGAGGGGGgGa-------UGGCCGC-GUCGUUu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 195648 | 0.69 | 0.543095 |
Target: 5'- cGCCUCgCCUCCCggcaGCCGa-GCGGCGGAg -3' miRNA: 3'- -CGGAG-GGGGGGa---UGGCcgCGUCGUUU- -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 118320 | 0.69 | 0.533709 |
Target: 5'- uGCC-CCUUCCCUGCCaGCcgGCGGUAGAg -3' miRNA: 3'- -CGGaGGGGGGGAUGGcCG--CGUCGUUU- -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 229523 | 0.69 | 0.524381 |
Target: 5'- cGCCUCaCCCCgCCUuccgCGGaCGCGGCGc- -3' miRNA: 3'- -CGGAG-GGGG-GGAug--GCC-GCGUCGUuu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 78636 | 0.69 | 0.496791 |
Target: 5'- cGCCUCCgCCaCCCaagagaucgGCCGccaGCGCAGCGGc -3' miRNA: 3'- -CGGAGG-GG-GGGa--------UGGC---CGCGUCGUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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