Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15888 | 3' | -62.4 | NC_004065.1 | + | 42716 | 1.07 | 0.001419 |
Target: 5'- gGCCUCCCCCCCUACCGGCGCAGCAAAa -3' miRNA: 3'- -CGGAGGGGGGGAUGGCCGCGUCGUUU- -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 62604 | 0.77 | 0.189617 |
Target: 5'- cGCCgCCgCCCCC-GCCGGCGgCAGCAGc -3' miRNA: 3'- -CGGaGG-GGGGGaUGGCCGC-GUCGUUu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 5778 | 0.74 | 0.292886 |
Target: 5'- uGCUUCCCCuCCCgcucGCCgGGCGCAGgAGGa -3' miRNA: 3'- -CGGAGGGG-GGGa---UGG-CCGCGUCgUUU- -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 154440 | 0.74 | 0.280215 |
Target: 5'- gGCCUCCCCCC--GCCGGCGaCA-CGAAc -3' miRNA: 3'- -CGGAGGGGGGgaUGGCCGC-GUcGUUU- -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 32499 | 0.73 | 0.333564 |
Target: 5'- uCgUCCCCUUCUACCGcGCGCGGCc-- -3' miRNA: 3'- cGgAGGGGGGGAUGGC-CGCGUCGuuu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 90673 | 0.73 | 0.312724 |
Target: 5'- uGCUguuggCCCCCUUGCCGGCGCugGGCAc- -3' miRNA: 3'- -CGGag---GGGGGGAUGGCCGCG--UCGUuu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 127123 | 0.72 | 0.348748 |
Target: 5'- uUCUCCCCCaucgcggcggcggcgCUACCGGCGgCGGCGAu -3' miRNA: 3'- cGGAGGGGGg--------------GAUGGCCGC-GUCGUUu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 24749 | 0.72 | 0.355405 |
Target: 5'- cGCaCUCguugggcggCCCCCCguugGCCGGCGCGGguAu -3' miRNA: 3'- -CG-GAG---------GGGGGGa---UGGCCGCGUCguUu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 120133 | 0.72 | 0.378233 |
Target: 5'- aGCCgggaCCCCCCgACgCGGCcGCGGCGAc -3' miRNA: 3'- -CGGag--GGGGGGaUG-GCCG-CGUCGUUu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 112770 | 0.7 | 0.487739 |
Target: 5'- cGCCUCUugCCCCagUGCCGGUugaagaagcGCAGCAGc -3' miRNA: 3'- -CGGAGG--GGGGg-AUGGCCG---------CGUCGUUu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 7278 | 0.7 | 0.478765 |
Target: 5'- cGCCUCCCCUCCUACguUGG-GUcccgGGCGAGg -3' miRNA: 3'- -CGGAGGGGGGGAUG--GCCgCG----UCGUUU- -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 134840 | 0.7 | 0.486838 |
Target: 5'- gGCCUCCCCcggagacgggCCCUggacccuGCaCGGCGgCGGCGAc -3' miRNA: 3'- -CGGAGGGG----------GGGA-------UG-GCCGC-GUCGUUu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 179416 | 0.7 | 0.487739 |
Target: 5'- gGCCUCCgUCCCgaggaagagGCCGGCGCccgaagacAGUAGGg -3' miRNA: 3'- -CGGAGGgGGGGa--------UGGCCGCG--------UCGUUU- -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 120255 | 0.7 | 0.435186 |
Target: 5'- cGCCUgCCCUgCUggACCGGCGC-GUAGAa -3' miRNA: 3'- -CGGAgGGGGgGA--UGGCCGCGuCGUUU- -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 87588 | 0.69 | 0.524381 |
Target: 5'- cGCCUUCaugaCCCUgaggaGCCGGCGCgccGGCAGg -3' miRNA: 3'- -CGGAGGg---GGGGa----UGGCCGCG---UCGUUu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 154263 | 0.69 | 0.505918 |
Target: 5'- cGCCUCCgccuCCCCCgggucagcGCUGGgGCAGCc-- -3' miRNA: 3'- -CGGAGG----GGGGGa-------UGGCCgCGUCGuuu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 229523 | 0.69 | 0.524381 |
Target: 5'- cGCCUCaCCCCgCCUuccgCGGaCGCGGCGc- -3' miRNA: 3'- -CGGAG-GGGG-GGAug--GCC-GCGUCGUuu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 110419 | 0.69 | 0.543095 |
Target: 5'- cGUCUCCUCCgCC-GCCGGCGUccuGCAc- -3' miRNA: 3'- -CGGAGGGGG-GGaUGGCCGCGu--CGUuu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 78636 | 0.69 | 0.496791 |
Target: 5'- cGCCUCCgCCaCCCaagagaucgGCCGccaGCGCAGCGGc -3' miRNA: 3'- -CGGAGG-GG-GGGa--------UGGC---CGCGUCGUUu -5' |
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15888 | 3' | -62.4 | NC_004065.1 | + | 118320 | 0.69 | 0.533709 |
Target: 5'- uGCC-CCUUCCCUGCCaGCcgGCGGUAGAg -3' miRNA: 3'- -CGGaGGGGGGGAUGGcCG--CGUCGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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