miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15888 3' -62.4 NC_004065.1 + 89567 0.67 0.647731
Target:  5'- aUCUCCCCCCgUcACCuuacuucGGCcGCGGCAAc -3'
miRNA:   3'- cGGAGGGGGGgA-UGG-------CCG-CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 142414 0.67 0.639027
Target:  5'- gGCCaUCUUUCgCCUGCCGGCGCgccGGCu-- -3'
miRNA:   3'- -CGG-AGGGGG-GGAUGGCCGCG---UCGuuu -5'
15888 3' -62.4 NC_004065.1 + 205403 0.67 0.636124
Target:  5'- cGCCUCCUCaaCUggcgcuuucgcaacACCGGCgGCGGCGGu -3'
miRNA:   3'- -CGGAGGGGggGA--------------UGGCCG-CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 94086 0.67 0.62935
Target:  5'- uGCCUCUCgCCUUucGCuCGGCGCuGCGu- -3'
miRNA:   3'- -CGGAGGGgGGGA--UG-GCCGCGuCGUuu -5'
15888 3' -62.4 NC_004065.1 + 188534 0.67 0.62935
Target:  5'- cGCgCUCCCCguCCCgacgccCCGGCGCAcGCu-- -3'
miRNA:   3'- -CG-GAGGGG--GGGau----GGCCGCGU-CGuuu -5'
15888 3' -62.4 NC_004065.1 + 199910 0.67 0.62935
Target:  5'- cCCUCCCCaggCC-GCCGGgGCuGCAGc -3'
miRNA:   3'- cGGAGGGGg--GGaUGGCCgCGuCGUUu -5'
15888 3' -62.4 NC_004065.1 + 125354 0.67 0.619676
Target:  5'- cGCCUCgUgaCCCU-CCGGCGCGcGCAc- -3'
miRNA:   3'- -CGGAGgGg-GGGAuGGCCGCGU-CGUuu -5'
15888 3' -62.4 NC_004065.1 + 65419 0.67 0.619676
Target:  5'- aGCCUCUUCCCC-GCCuGCgaGCGGCGGc -3'
miRNA:   3'- -CGGAGGGGGGGaUGGcCG--CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 165119 0.68 0.600359
Target:  5'- gGCgUCCCgCCCggcgACUGGCGCcGCu-- -3'
miRNA:   3'- -CGgAGGGgGGGa---UGGCCGCGuCGuuu -5'
15888 3' -62.4 NC_004065.1 + 223781 0.68 0.597467
Target:  5'- cGCCgcacgacaggacuaCCUCCaGCCGGUGCGGCAGAu -3'
miRNA:   3'- -CGGagg-----------GGGGGaUGGCCGCGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 174101 0.68 0.571555
Target:  5'- gGCUUCUCCgacUUCUGCCGGCGCGGa--- -3'
miRNA:   3'- -CGGAGGGG---GGGAUGGCCGCGUCguuu -5'
15888 3' -62.4 NC_004065.1 + 159918 0.68 0.571555
Target:  5'- cGCCgCCgCCgCUGCCGGUGCuGCu-- -3'
miRNA:   3'- -CGGaGGgGGgGAUGGCCGCGuCGuuu -5'
15888 3' -62.4 NC_004065.1 + 78857 0.68 0.562023
Target:  5'- aCCUCUCCCCCUacgggaacgACCaGGUGUcGCGGAg -3'
miRNA:   3'- cGGAGGGGGGGA---------UGG-CCGCGuCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 131361 0.68 0.561072
Target:  5'- gGCgUCCCCCCCgucagcaACCGcGCGUacguacgAGCGAc -3'
miRNA:   3'- -CGgAGGGGGGGa------UGGC-CGCG-------UCGUUu -5'
15888 3' -62.4 NC_004065.1 + 151207 0.68 0.552535
Target:  5'- uGCCUCCUgaUCaCCgguaccGCCGGCGCGGgGAAg -3'
miRNA:   3'- -CGGAGGG--GG-GGa-----UGGCCGCGUCgUUU- -5'
15888 3' -62.4 NC_004065.1 + 110419 0.69 0.543095
Target:  5'- cGUCUCCUCCgCC-GCCGGCGUccuGCAc- -3'
miRNA:   3'- -CGGAGGGGG-GGaUGGCCGCGu--CGUuu -5'
15888 3' -62.4 NC_004065.1 + 195648 0.69 0.543095
Target:  5'- cGCCUCgCCUCCCggcaGCCGa-GCGGCGGAg -3'
miRNA:   3'- -CGGAG-GGGGGGa---UGGCcgCGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 65308 0.69 0.543095
Target:  5'- uCCUUCCCCgCguggugggACCGGCGgCGGCGGc -3'
miRNA:   3'- cGGAGGGGGgGa-------UGGCCGC-GUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 118320 0.69 0.533709
Target:  5'- uGCC-CCUUCCCUGCCaGCcgGCGGUAGAg -3'
miRNA:   3'- -CGGaGGGGGGGAUGGcCG--CGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 229523 0.69 0.524381
Target:  5'- cGCCUCaCCCCgCCUuccgCGGaCGCGGCGc- -3'
miRNA:   3'- -CGGAG-GGGG-GGAug--GCC-GCGUCGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.