miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15888 3' -62.4 NC_004065.1 + 5778 0.74 0.292886
Target:  5'- uGCUUCCCCuCCCgcucGCCgGGCGCAGgAGGa -3'
miRNA:   3'- -CGGAGGGG-GGGa---UGG-CCGCGUCgUUU- -5'
15888 3' -62.4 NC_004065.1 + 7278 0.7 0.478765
Target:  5'- cGCCUCCCCUCCUACguUGG-GUcccgGGCGAGg -3'
miRNA:   3'- -CGGAGGGGGGGAUG--GCCgCG----UCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 24749 0.72 0.355405
Target:  5'- cGCaCUCguugggcggCCCCCCguugGCCGGCGCGGguAu -3'
miRNA:   3'- -CG-GAG---------GGGGGGa---UGGCCGCGUCguUu -5'
15888 3' -62.4 NC_004065.1 + 26168 0.67 0.648698
Target:  5'- aGCCgUCCuauuCCCCgUGCCGGCGCGu---- -3'
miRNA:   3'- -CGG-AGG----GGGGgAUGGCCGCGUcguuu -5'
15888 3' -62.4 NC_004065.1 + 28656 0.66 0.677613
Target:  5'- gGCa--CCCCCCgGCgaGGCGCAGCu-- -3'
miRNA:   3'- -CGgagGGGGGGaUGg-CCGCGUCGuuu -5'
15888 3' -62.4 NC_004065.1 + 32499 0.73 0.333564
Target:  5'- uCgUCCCCUUCUACCGcGCGCGGCc-- -3'
miRNA:   3'- cGgAGGGGGGGAUGGC-CGCGUCGuuu -5'
15888 3' -62.4 NC_004065.1 + 42716 1.07 0.001419
Target:  5'- gGCCUCCCCCCCUACCGGCGCAGCAAAa -3'
miRNA:   3'- -CGGAGGGGGGGAUGGCCGCGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 42723 0.66 0.667999
Target:  5'- uCCUCCgCCCCagugAUCGcaGCGCGGCGGc -3'
miRNA:   3'- cGGAGGgGGGGa---UGGC--CGCGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 62604 0.77 0.189617
Target:  5'- cGCCgCCgCCCCC-GCCGGCGgCAGCAGc -3'
miRNA:   3'- -CGGaGG-GGGGGaUGGCCGC-GUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 65308 0.69 0.543095
Target:  5'- uCCUUCCCCgCguggugggACCGGCGgCGGCGGc -3'
miRNA:   3'- cGGAGGGGGgGa-------UGGCCGC-GUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 65419 0.67 0.619676
Target:  5'- aGCCUCUUCCCC-GCCuGCgaGCGGCGGc -3'
miRNA:   3'- -CGGAGGGGGGGaUGGcCG--CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 78563 0.66 0.715665
Target:  5'- uCCUCUCCCUCU-CCGGagcgacaGUGGCAAc -3'
miRNA:   3'- cGGAGGGGGGGAuGGCCg------CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 78636 0.69 0.496791
Target:  5'- cGCCUCCgCCaCCCaagagaucgGCCGccaGCGCAGCGGc -3'
miRNA:   3'- -CGGAGG-GG-GGGa--------UGGC---CGCGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 78857 0.68 0.562023
Target:  5'- aCCUCUCCCCCUacgggaacgACCaGGUGUcGCGGAg -3'
miRNA:   3'- cGGAGGGGGGGA---------UGG-CCGCGuCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 80103 0.66 0.705281
Target:  5'- cGCCUCCUgCCgaGCCGcGCGCcccucauccaaccGGCAc- -3'
miRNA:   3'- -CGGAGGGgGGgaUGGC-CGCG-------------UCGUuu -5'
15888 3' -62.4 NC_004065.1 + 82246 0.66 0.714724
Target:  5'- uCCUCCCCUCCUccagcauccgcuuGCCGaucuUGCGGCAc- -3'
miRNA:   3'- cGGAGGGGGGGA-------------UGGCc---GCGUCGUuu -5'
15888 3' -62.4 NC_004065.1 + 82674 0.66 0.677613
Target:  5'- uGCCUCCUggCCgagaGGCGCAGCAu- -3'
miRNA:   3'- -CGGAGGGggGGauggCCGCGUCGUuu -5'
15888 3' -62.4 NC_004065.1 + 87588 0.69 0.524381
Target:  5'- cGCCUUCaugaCCCUgaggaGCCGGCGCgccGGCAGg -3'
miRNA:   3'- -CGGAGGg---GGGGa----UGGCCGCG---UCGUUu -5'
15888 3' -62.4 NC_004065.1 + 89287 0.66 0.706228
Target:  5'- uCCUCCaCCuugCCCacguugACCGaGCGCGGCAGc -3'
miRNA:   3'- cGGAGG-GG---GGGa-----UGGC-CGCGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 89567 0.67 0.647731
Target:  5'- aUCUCCCCCCgUcACCuuacuucGGCcGCGGCAAc -3'
miRNA:   3'- cGGAGGGGGGgA-UGG-------CCG-CGUCGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.