miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15888 3' -62.4 NC_004065.1 + 90673 0.73 0.312724
Target:  5'- uGCUguuggCCCCCUUGCCGGCGCugGGCAc- -3'
miRNA:   3'- -CGGag---GGGGGGAUGGCCGCG--UCGUuu -5'
15888 3' -62.4 NC_004065.1 + 92364 0.66 0.667999
Target:  5'- gGUCUCguagcaCCCCCUAgCGGaagaCGCAGCAc- -3'
miRNA:   3'- -CGGAGg-----GGGGGAUgGCC----GCGUCGUuu -5'
15888 3' -62.4 NC_004065.1 + 94086 0.67 0.62935
Target:  5'- uGCCUCUCgCCUUucGCuCGGCGCuGCGu- -3'
miRNA:   3'- -CGGAGGGgGGGA--UG-GCCGCGuCGUuu -5'
15888 3' -62.4 NC_004065.1 + 96951 0.66 0.687195
Target:  5'- cGCCUCUCCCCgucugCUGCCGcGCcuGCuGCGc- -3'
miRNA:   3'- -CGGAGGGGGG-----GAUGGC-CG--CGuCGUuu -5'
15888 3' -62.4 NC_004065.1 + 110419 0.69 0.543095
Target:  5'- cGUCUCCUCCgCC-GCCGGCGUccuGCAc- -3'
miRNA:   3'- -CGGAGGGGG-GGaUGGCCGCGu--CGUuu -5'
15888 3' -62.4 NC_004065.1 + 112770 0.7 0.487739
Target:  5'- cGCCUCUugCCCCagUGCCGGUugaagaagcGCAGCAGc -3'
miRNA:   3'- -CGGAGG--GGGGg-AUGGCCG---------CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 115186 0.66 0.667999
Target:  5'- cGUCUCCuCUUCCUGCCGGaGuCGGCGc- -3'
miRNA:   3'- -CGGAGG-GGGGGAUGGCCgC-GUCGUuu -5'
15888 3' -62.4 NC_004065.1 + 118320 0.69 0.533709
Target:  5'- uGCC-CCUUCCCUGCCaGCcgGCGGUAGAg -3'
miRNA:   3'- -CGGaGGGGGGGAUGGcCG--CGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 120133 0.72 0.378233
Target:  5'- aGCCgggaCCCCCCgACgCGGCcGCGGCGAc -3'
miRNA:   3'- -CGGag--GGGGGGaUG-GCCG-CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 120255 0.7 0.435186
Target:  5'- cGCCUgCCCUgCUggACCGGCGC-GUAGAa -3'
miRNA:   3'- -CGGAgGGGGgGA--UGGCCGCGuCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 122257 0.66 0.667999
Target:  5'- gGCgUCCugaaCCCCCcGCCGGC-CAGCu-- -3'
miRNA:   3'- -CGgAGG----GGGGGaUGGCCGcGUCGuuu -5'
15888 3' -62.4 NC_004065.1 + 125354 0.67 0.619676
Target:  5'- cGCCUCgUgaCCCU-CCGGCGCGcGCAc- -3'
miRNA:   3'- -CGGAGgGg-GGGAuGGCCGCGU-CGUuu -5'
15888 3' -62.4 NC_004065.1 + 125589 0.66 0.667999
Target:  5'- uGCUUCgCCUCgUugGCCGuGCGCGGCGGGu -3'
miRNA:   3'- -CGGAGgGGGGgA--UGGC-CGCGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 127123 0.72 0.348748
Target:  5'- uUCUCCCCCaucgcggcggcggcgCUACCGGCGgCGGCGAu -3'
miRNA:   3'- cGGAGGGGGg--------------GAUGGCCGC-GUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 131361 0.68 0.561072
Target:  5'- gGCgUCCCCCCCgucagcaACCGcGCGUacguacgAGCGAc -3'
miRNA:   3'- -CGgAGGGGGGGa------UGGC-CGCG-------UCGUUu -5'
15888 3' -62.4 NC_004065.1 + 134840 0.7 0.486838
Target:  5'- gGCCUCCCCcggagacgggCCCUggacccuGCaCGGCGgCGGCGAc -3'
miRNA:   3'- -CGGAGGGG----------GGGA-------UG-GCCGC-GUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 135805 0.67 0.658358
Target:  5'- gGCgCUCUCCUCCgaucuucAUCGGCGuCGGCGAu -3'
miRNA:   3'- -CG-GAGGGGGGGa------UGGCCGC-GUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 138703 0.66 0.677613
Target:  5'- gGCCUCaaggagCUCCUCUAgCGGgGCAGCu-- -3'
miRNA:   3'- -CGGAG------GGGGGGAUgGCCgCGUCGuuu -5'
15888 3' -62.4 NC_004065.1 + 141652 0.66 0.706228
Target:  5'- gGCCUacaCCgCCaCCUUGCUGG-GCAGCGAc -3'
miRNA:   3'- -CGGA---GG-GG-GGGAUGGCCgCGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 142414 0.67 0.639027
Target:  5'- gGCCaUCUUUCgCCUGCCGGCGCgccGGCu-- -3'
miRNA:   3'- -CGG-AGGGGG-GGAUGGCCGCG---UCGuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.