miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15888 3' -62.4 NC_004065.1 + 229523 0.69 0.524381
Target:  5'- cGCCUCaCCCCgCCUuccgCGGaCGCGGCGc- -3'
miRNA:   3'- -CGGAG-GGGG-GGAug--GCC-GCGUCGUuu -5'
15888 3' -62.4 NC_004065.1 + 223781 0.68 0.597467
Target:  5'- cGCCgcacgacaggacuaCCUCCaGCCGGUGCGGCAGAu -3'
miRNA:   3'- -CGGagg-----------GGGGGaUGGCCGCGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 205403 0.67 0.636124
Target:  5'- cGCCUCCUCaaCUggcgcuuucgcaacACCGGCgGCGGCGGu -3'
miRNA:   3'- -CGGAGGGGggGA--------------UGGCCG-CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 199910 0.67 0.62935
Target:  5'- cCCUCCCCaggCC-GCCGGgGCuGCAGc -3'
miRNA:   3'- cGGAGGGGg--GGaUGGCCgCGuCGUUu -5'
15888 3' -62.4 NC_004065.1 + 197511 0.66 0.696736
Target:  5'- gGUCUCCgagggaCCCgGCCGcGCGCGGUAGAa -3'
miRNA:   3'- -CGGAGGgg----GGGaUGGC-CGCGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 195648 0.69 0.543095
Target:  5'- cGCCUCgCCUCCCggcaGCCGa-GCGGCGGAg -3'
miRNA:   3'- -CGGAG-GGGGGGa---UGGCcgCGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 188534 0.67 0.62935
Target:  5'- cGCgCUCCCCguCCCgacgccCCGGCGCAcGCu-- -3'
miRNA:   3'- -CG-GAGGGG--GGGau----GGCCGCGU-CGuuu -5'
15888 3' -62.4 NC_004065.1 + 179416 0.7 0.487739
Target:  5'- gGCCUCCgUCCCgaggaagagGCCGGCGCccgaagacAGUAGGg -3'
miRNA:   3'- -CGGAGGgGGGGa--------UGGCCGCG--------UCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 174101 0.68 0.571555
Target:  5'- gGCUUCUCCgacUUCUGCCGGCGCGGa--- -3'
miRNA:   3'- -CGGAGGGG---GGGAUGGCCGCGUCguuu -5'
15888 3' -62.4 NC_004065.1 + 172294 0.66 0.715665
Target:  5'- uCCUCCCCUCCUcucGCC--CGCGGUGAAu -3'
miRNA:   3'- cGGAGGGGGGGA---UGGccGCGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 165119 0.68 0.600359
Target:  5'- gGCgUCCCgCCCggcgACUGGCGCcGCu-- -3'
miRNA:   3'- -CGgAGGGgGGGa---UGGCCGCGuCGuuu -5'
15888 3' -62.4 NC_004065.1 + 160891 0.66 0.725037
Target:  5'- aGCUUCCCCagcaCCUUGUCGGCGCGccGCGc- -3'
miRNA:   3'- -CGGAGGGG----GGGAUGGCCGCGU--CGUuu -5'
15888 3' -62.4 NC_004065.1 + 159918 0.68 0.571555
Target:  5'- cGCCgCCgCCgCUGCCGGUGCuGCu-- -3'
miRNA:   3'- -CGGaGGgGGgGAUGGCCGCGuCGuuu -5'
15888 3' -62.4 NC_004065.1 + 154440 0.74 0.280215
Target:  5'- gGCCUCCCCCC--GCCGGCGaCA-CGAAc -3'
miRNA:   3'- -CGGAGGGGGGgaUGGCCGC-GUcGUUU- -5'
15888 3' -62.4 NC_004065.1 + 154263 0.69 0.505918
Target:  5'- cGCCUCCgccuCCCCCgggucagcGCUGGgGCAGCc-- -3'
miRNA:   3'- -CGGAGG----GGGGGa-------UGGCCgCGUCGuuu -5'
15888 3' -62.4 NC_004065.1 + 151207 0.68 0.552535
Target:  5'- uGCCUCCUgaUCaCCgguaccGCCGGCGCGGgGAAg -3'
miRNA:   3'- -CGGAGGG--GG-GGa-----UGGCCGCGUCgUUU- -5'
15888 3' -62.4 NC_004065.1 + 150496 0.67 0.658358
Target:  5'- cGCCUUCUCCCgCUcgGCCGuGCGUaccucGGCGAu -3'
miRNA:   3'- -CGGAGGGGGG-GA--UGGC-CGCG-----UCGUUu -5'
15888 3' -62.4 NC_004065.1 + 142414 0.67 0.639027
Target:  5'- gGCCaUCUUUCgCCUGCCGGCGCgccGGCu-- -3'
miRNA:   3'- -CGG-AGGGGG-GGAUGGCCGCG---UCGuuu -5'
15888 3' -62.4 NC_004065.1 + 141652 0.66 0.706228
Target:  5'- gGCCUacaCCgCCaCCUUGCUGG-GCAGCGAc -3'
miRNA:   3'- -CGGA---GG-GG-GGGAUGGCCgCGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 138703 0.66 0.677613
Target:  5'- gGCCUCaaggagCUCCUCUAgCGGgGCAGCu-- -3'
miRNA:   3'- -CGGAG------GGGGGGAUgGCCgCGUCGuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.