miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15888 3' -62.4 NC_004065.1 + 96951 0.66 0.687195
Target:  5'- cGCCUCUCCCCgucugCUGCCGcGCcuGCuGCGc- -3'
miRNA:   3'- -CGGAGGGGGG-----GAUGGC-CG--CGuCGUuu -5'
15888 3' -62.4 NC_004065.1 + 94086 0.67 0.62935
Target:  5'- uGCCUCUCgCCUUucGCuCGGCGCuGCGu- -3'
miRNA:   3'- -CGGAGGGgGGGA--UG-GCCGCGuCGUuu -5'
15888 3' -62.4 NC_004065.1 + 142414 0.67 0.639027
Target:  5'- gGCCaUCUUUCgCCUGCCGGCGCgccGGCu-- -3'
miRNA:   3'- -CGG-AGGGGG-GGAUGGCCGCG---UCGuuu -5'
15888 3' -62.4 NC_004065.1 + 26168 0.67 0.648698
Target:  5'- aGCCgUCCuauuCCCCgUGCCGGCGCGu---- -3'
miRNA:   3'- -CGG-AGG----GGGGgAUGGCCGCGUcguuu -5'
15888 3' -62.4 NC_004065.1 + 135805 0.67 0.658358
Target:  5'- gGCgCUCUCCUCCgaucuucAUCGGCGuCGGCGAu -3'
miRNA:   3'- -CG-GAGGGGGGGa------UGGCCGC-GUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 150496 0.67 0.658358
Target:  5'- cGCCUUCUCCCgCUcgGCCGuGCGUaccucGGCGAu -3'
miRNA:   3'- -CGGAGGGGGG-GA--UGGC-CGCG-----UCGUUu -5'
15888 3' -62.4 NC_004065.1 + 125589 0.66 0.667999
Target:  5'- uGCUUCgCCUCgUugGCCGuGCGCGGCGGGu -3'
miRNA:   3'- -CGGAGgGGGGgA--UGGC-CGCGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 92364 0.66 0.667999
Target:  5'- gGUCUCguagcaCCCCCUAgCGGaagaCGCAGCAc- -3'
miRNA:   3'- -CGGAGg-----GGGGGAUgGCC----GCGUCGUuu -5'
15888 3' -62.4 NC_004065.1 + 42723 0.66 0.667999
Target:  5'- uCCUCCgCCCCagugAUCGcaGCGCGGCGGc -3'
miRNA:   3'- cGGAGGgGGGGa---UGGC--CGCGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 125354 0.67 0.619676
Target:  5'- cGCCUCgUgaCCCU-CCGGCGCGcGCAc- -3'
miRNA:   3'- -CGGAGgGg-GGGAuGGCCGCGU-CGUuu -5'
15888 3' -62.4 NC_004065.1 + 223781 0.68 0.597467
Target:  5'- cGCCgcacgacaggacuaCCUCCaGCCGGUGCGGCAGAu -3'
miRNA:   3'- -CGGagg-----------GGGGGaUGGCCGCGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 78857 0.68 0.562023
Target:  5'- aCCUCUCCCCCUacgggaacgACCaGGUGUcGCGGAg -3'
miRNA:   3'- cGGAGGGGGGGA---------UGG-CCGCGuCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 90673 0.73 0.312724
Target:  5'- uGCUguuggCCCCCUUGCCGGCGCugGGCAc- -3'
miRNA:   3'- -CGGag---GGGGGGAUGGCCGCG--UCGUuu -5'
15888 3' -62.4 NC_004065.1 + 127123 0.72 0.348748
Target:  5'- uUCUCCCCCaucgcggcggcggcgCUACCGGCGgCGGCGAu -3'
miRNA:   3'- cGGAGGGGGg--------------GAUGGCCGC-GUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 24749 0.72 0.355405
Target:  5'- cGCaCUCguugggcggCCCCCCguugGCCGGCGCGGguAu -3'
miRNA:   3'- -CG-GAG---------GGGGGGa---UGGCCGCGUCguUu -5'
15888 3' -62.4 NC_004065.1 + 134840 0.7 0.486838
Target:  5'- gGCCUCCCCcggagacgggCCCUggacccuGCaCGGCGgCGGCGAc -3'
miRNA:   3'- -CGGAGGGG----------GGGA-------UG-GCCGC-GUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 112770 0.7 0.487739
Target:  5'- cGCCUCUugCCCCagUGCCGGUugaagaagcGCAGCAGc -3'
miRNA:   3'- -CGGAGG--GGGGg-AUGGCCG---------CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 78636 0.69 0.496791
Target:  5'- cGCCUCCgCCaCCCaagagaucgGCCGccaGCGCAGCGGc -3'
miRNA:   3'- -CGGAGG-GG-GGGa--------UGGC---CGCGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 110419 0.69 0.543095
Target:  5'- cGUCUCCUCCgCC-GCCGGCGUccuGCAc- -3'
miRNA:   3'- -CGGAGGGGG-GGaUGGCCGCGu--CGUuu -5'
15888 3' -62.4 NC_004065.1 + 151207 0.68 0.552535
Target:  5'- uGCCUCCUgaUCaCCgguaccGCCGGCGCGGgGAAg -3'
miRNA:   3'- -CGGAGGG--GG-GGa-----UGGCCGCGUCgUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.