miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15888 3' -62.4 NC_004065.1 + 42716 1.07 0.001419
Target:  5'- gGCCUCCCCCCCUACCGGCGCAGCAAAa -3'
miRNA:   3'- -CGGAGGGGGGGAUGGCCGCGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 165119 0.68 0.600359
Target:  5'- gGCgUCCCgCCCggcgACUGGCGCcGCu-- -3'
miRNA:   3'- -CGgAGGGgGGGa---UGGCCGCGuCGuuu -5'
15888 3' -62.4 NC_004065.1 + 188534 0.67 0.62935
Target:  5'- cGCgCUCCCCguCCCgacgccCCGGCGCAcGCu-- -3'
miRNA:   3'- -CG-GAGGGG--GGGau----GGCCGCGU-CGuuu -5'
15888 3' -62.4 NC_004065.1 + 160891 0.66 0.725037
Target:  5'- aGCUUCCCCagcaCCUUGUCGGCGCGccGCGc- -3'
miRNA:   3'- -CGGAGGGG----GGGAUGGCCGCGU--CGUuu -5'
15888 3' -62.4 NC_004065.1 + 120133 0.72 0.378233
Target:  5'- aGCCgggaCCCCCCgACgCGGCcGCGGCGAc -3'
miRNA:   3'- -CGGag--GGGGGGaUG-GCCG-CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 120255 0.7 0.435186
Target:  5'- cGCCUgCCCUgCUggACCGGCGC-GUAGAa -3'
miRNA:   3'- -CGGAgGGGGgGA--UGGCCGCGuCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 179416 0.7 0.487739
Target:  5'- gGCCUCCgUCCCgaggaagagGCCGGCGCccgaagacAGUAGGg -3'
miRNA:   3'- -CGGAGGgGGGGa--------UGGCCGCG--------UCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 154263 0.69 0.505918
Target:  5'- cGCCUCCgccuCCCCCgggucagcGCUGGgGCAGCc-- -3'
miRNA:   3'- -CGGAGG----GGGGGa-------UGGCCgCGUCGuuu -5'
15888 3' -62.4 NC_004065.1 + 118320 0.69 0.533709
Target:  5'- uGCC-CCUUCCCUGCCaGCcgGCGGUAGAg -3'
miRNA:   3'- -CGGaGGGGGGGAUGGcCG--CGUCGUUU- -5'
15888 3' -62.4 NC_004065.1 + 159918 0.68 0.571555
Target:  5'- cGCCgCCgCCgCUGCCGGUGCuGCu-- -3'
miRNA:   3'- -CGGaGGgGGgGAUGGCCGCGuCGuuu -5'
15888 3' -62.4 NC_004065.1 + 65308 0.69 0.543095
Target:  5'- uCCUUCCCCgCguggugggACCGGCGgCGGCGGc -3'
miRNA:   3'- cGGAGGGGGgGa-------UGGCCGC-GUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 229523 0.69 0.524381
Target:  5'- cGCCUCaCCCCgCCUuccgCGGaCGCGGCGc- -3'
miRNA:   3'- -CGGAG-GGGG-GGAug--GCC-GCGUCGUuu -5'
15888 3' -62.4 NC_004065.1 + 154440 0.74 0.280215
Target:  5'- gGCCUCCCCCC--GCCGGCGaCA-CGAAc -3'
miRNA:   3'- -CGGAGGGGGGgaUGGCCGC-GUcGUUU- -5'
15888 3' -62.4 NC_004065.1 + 131361 0.68 0.561072
Target:  5'- gGCgUCCCCCCCgucagcaACCGcGCGUacguacgAGCGAc -3'
miRNA:   3'- -CGgAGGGGGGGa------UGGC-CGCG-------UCGUUu -5'
15888 3' -62.4 NC_004065.1 + 5778 0.74 0.292886
Target:  5'- uGCUUCCCCuCCCgcucGCCgGGCGCAGgAGGa -3'
miRNA:   3'- -CGGAGGGG-GGGa---UGG-CCGCGUCgUUU- -5'
15888 3' -62.4 NC_004065.1 + 87588 0.69 0.524381
Target:  5'- cGCCUUCaugaCCCUgaggaGCCGGCGCgccGGCAGg -3'
miRNA:   3'- -CGGAGGg---GGGGa----UGGCCGCG---UCGUUu -5'
15888 3' -62.4 NC_004065.1 + 174101 0.68 0.571555
Target:  5'- gGCUUCUCCgacUUCUGCCGGCGCGGa--- -3'
miRNA:   3'- -CGGAGGGG---GGGAUGGCCGCGUCguuu -5'
15888 3' -62.4 NC_004065.1 + 65419 0.67 0.619676
Target:  5'- aGCCUCUUCCCC-GCCuGCgaGCGGCGGc -3'
miRNA:   3'- -CGGAGGGGGGGaUGGcCG--CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 32499 0.73 0.333564
Target:  5'- uCgUCCCCUUCUACCGcGCGCGGCc-- -3'
miRNA:   3'- cGgAGGGGGGGAUGGC-CGCGUCGuuu -5'
15888 3' -62.4 NC_004065.1 + 7278 0.7 0.478765
Target:  5'- cGCCUCCCCUCCUACguUGG-GUcccgGGCGAGg -3'
miRNA:   3'- -CGGAGGGGGGGAUG--GCCgCG----UCGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.