miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15888 3' -62.4 NC_004065.1 + 159918 0.68 0.571555
Target:  5'- cGCCgCCgCCgCUGCCGGUGCuGCu-- -3'
miRNA:   3'- -CGGaGGgGGgGAUGGCCGCGuCGuuu -5'
15888 3' -62.4 NC_004065.1 + 165119 0.68 0.600359
Target:  5'- gGCgUCCCgCCCggcgACUGGCGCcGCu-- -3'
miRNA:   3'- -CGgAGGGgGGGa---UGGCCGCGuCGuuu -5'
15888 3' -62.4 NC_004065.1 + 122257 0.66 0.667999
Target:  5'- gGCgUCCugaaCCCCCcGCCGGC-CAGCu-- -3'
miRNA:   3'- -CGgAGG----GGGGGaUGGCCGcGUCGuuu -5'
15888 3' -62.4 NC_004065.1 + 80103 0.66 0.705281
Target:  5'- cGCCUCCUgCCgaGCCGcGCGCcccucauccaaccGGCAc- -3'
miRNA:   3'- -CGGAGGGgGGgaUGGC-CGCG-------------UCGUuu -5'
15888 3' -62.4 NC_004065.1 + 65419 0.67 0.619676
Target:  5'- aGCCUCUUCCCC-GCCuGCgaGCGGCGGc -3'
miRNA:   3'- -CGGAGGGGGGGaUGGcCG--CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 205403 0.67 0.636124
Target:  5'- cGCCUCCUCaaCUggcgcuuucgcaacACCGGCgGCGGCGGu -3'
miRNA:   3'- -CGGAGGGGggGA--------------UGGCCG-CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 82674 0.66 0.677613
Target:  5'- uGCCUCCUggCCgagaGGCGCAGCAu- -3'
miRNA:   3'- -CGGAGGGggGGauggCCGCGUCGUuu -5'
15888 3' -62.4 NC_004065.1 + 174101 0.68 0.571555
Target:  5'- gGCUUCUCCgacUUCUGCCGGCGCGGa--- -3'
miRNA:   3'- -CGGAGGGG---GGGAUGGCCGCGUCguuu -5'
15888 3' -62.4 NC_004065.1 + 89567 0.67 0.647731
Target:  5'- aUCUCCCCCCgUcACCuuacuucGGCcGCGGCAAc -3'
miRNA:   3'- cGGAGGGGGGgA-UGG-------CCG-CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 199910 0.67 0.62935
Target:  5'- cCCUCCCCaggCC-GCCGGgGCuGCAGc -3'
miRNA:   3'- cGGAGGGGg--GGaUGGCCgCGuCGUUu -5'
15888 3' -62.4 NC_004065.1 + 188534 0.67 0.62935
Target:  5'- cGCgCUCCCCguCCCgacgccCCGGCGCAcGCu-- -3'
miRNA:   3'- -CG-GAGGGG--GGGau----GGCCGCGU-CGuuu -5'
15888 3' -62.4 NC_004065.1 + 94086 0.67 0.62935
Target:  5'- uGCCUCUCgCCUUucGCuCGGCGCuGCGu- -3'
miRNA:   3'- -CGGAGGGgGGGA--UG-GCCGCGuCGUuu -5'
15888 3' -62.4 NC_004065.1 + 127123 0.72 0.348748
Target:  5'- uUCUCCCCCaucgcggcggcggcgCUACCGGCGgCGGCGAu -3'
miRNA:   3'- cGGAGGGGGg--------------GAUGGCCGC-GUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 141652 0.66 0.706228
Target:  5'- gGCCUacaCCgCCaCCUUGCUGG-GCAGCGAc -3'
miRNA:   3'- -CGGA---GG-GG-GGGAUGGCCgCGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 78636 0.69 0.496791
Target:  5'- cGCCUCCgCCaCCCaagagaucgGCCGccaGCGCAGCGGc -3'
miRNA:   3'- -CGGAGG-GG-GGGa--------UGGC---CGCGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 82246 0.66 0.714724
Target:  5'- uCCUCCCCUCCUccagcauccgcuuGCCGaucuUGCGGCAc- -3'
miRNA:   3'- cGGAGGGGGGGA-------------UGGCc---GCGUCGUuu -5'
15888 3' -62.4 NC_004065.1 + 78563 0.66 0.715665
Target:  5'- uCCUCUCCCUCU-CCGGagcgacaGUGGCAAc -3'
miRNA:   3'- cGGAGGGGGGGAuGGCCg------CGUCGUUu -5'
15888 3' -62.4 NC_004065.1 + 26168 0.67 0.648698
Target:  5'- aGCCgUCCuauuCCCCgUGCCGGCGCGu---- -3'
miRNA:   3'- -CGG-AGG----GGGGgAUGGCCGCGUcguuu -5'
15888 3' -62.4 NC_004065.1 + 142414 0.67 0.639027
Target:  5'- gGCCaUCUUUCgCCUGCCGGCGCgccGGCu-- -3'
miRNA:   3'- -CGG-AGGGGG-GGAUGGCCGCG---UCGuuu -5'
15888 3' -62.4 NC_004065.1 + 125354 0.67 0.619676
Target:  5'- cGCCUCgUgaCCCU-CCGGCGCGcGCAc- -3'
miRNA:   3'- -CGGAGgGg-GGGAuGGCCGCGU-CGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.