miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15888 5' -60 NC_004065.1 + 84333 0.66 0.829503
Target:  5'- uACCCCCgacccguuaGCGGCGGUcgucgaauccgGGAucGUGuCGAGg -3'
miRNA:   3'- uUGGGGG---------UGCCGCCA-----------UCU--CAC-GCUCa -5'
15888 5' -60 NC_004065.1 + 83846 0.66 0.829503
Target:  5'- uGGCgCCCACGGCGG-AGGGcucGCuGAGc -3'
miRNA:   3'- -UUGgGGGUGCCGCCaUCUCa--CG-CUCa -5'
15888 5' -60 NC_004065.1 + 148853 0.66 0.821394
Target:  5'- cGGCCgCCgcgaucgaggagGCGGCGGcGGGGgGCGAGg -3'
miRNA:   3'- -UUGGgGG------------UGCCGCCaUCUCaCGCUCa -5'
15888 5' -60 NC_004065.1 + 699 0.66 0.821394
Target:  5'- -cCCCCCGCGG-GGUuuuGGGUcGgGGGUa -3'
miRNA:   3'- uuGGGGGUGCCgCCAu--CUCA-CgCUCA- -5'
15888 5' -60 NC_004065.1 + 646 0.66 0.821394
Target:  5'- --aCCCCGgGGUGG-GGGG-GCGGGUa -3'
miRNA:   3'- uugGGGGUgCCGCCaUCUCaCGCUCA- -5'
15888 5' -60 NC_004065.1 + 203620 0.66 0.813128
Target:  5'- cGCCgCCGUGGCGGaguUGGAG-GCGGGg -3'
miRNA:   3'- uUGGgGGUGCCGCC---AUCUCaCGCUCa -5'
15888 5' -60 NC_004065.1 + 27829 0.66 0.813128
Target:  5'- -cCCCCCGgGGUGGUGGcuggccguGGUgccGCGGGg -3'
miRNA:   3'- uuGGGGGUgCCGCCAUC--------UCA---CGCUCa -5'
15888 5' -60 NC_004065.1 + 52659 0.66 0.813128
Target:  5'- uGGCCgCCGCuGGCGGUGGcGGUGgCGGa- -3'
miRNA:   3'- -UUGGgGGUG-CCGCCAUC-UCAC-GCUca -5'
15888 5' -60 NC_004065.1 + 60189 0.66 0.804711
Target:  5'- uGGCCCgCACGGCGGUGuAGUagauaaacuccGCGAu- -3'
miRNA:   3'- -UUGGGgGUGCCGCCAUcUCA-----------CGCUca -5'
15888 5' -60 NC_004065.1 + 140554 0.67 0.76969
Target:  5'- cGGCUUCCucuaGCGGCGGgcUGGAGUG-GAGUg -3'
miRNA:   3'- -UUGGGGG----UGCCGCC--AUCUCACgCUCA- -5'
15888 5' -60 NC_004065.1 + 120701 0.67 0.751475
Target:  5'- cAGCuCCCCGCGGaaauCGGUGGAGUagGAGa -3'
miRNA:   3'- -UUG-GGGGUGCC----GCCAUCUCAcgCUCa -5'
15888 5' -60 NC_004065.1 + 173324 0.68 0.713956
Target:  5'- cGCCgCUGCGGCGGagaAGAGUcGUGAGg -3'
miRNA:   3'- uUGGgGGUGCCGCCa--UCUCA-CGCUCa -5'
15888 5' -60 NC_004065.1 + 52474 0.68 0.713956
Target:  5'- -uCCUCCuuuUGGCGGUGGGGUGUuGGg -3'
miRNA:   3'- uuGGGGGu--GCCGCCAUCUCACGcUCa -5'
15888 5' -60 NC_004065.1 + 136587 0.68 0.713956
Target:  5'- --gUCCUGCGGUccggggauccgGGUGGGGUGCGGGg -3'
miRNA:   3'- uugGGGGUGCCG-----------CCAUCUCACGCUCa -5'
15888 5' -60 NC_004065.1 + 63522 0.68 0.713956
Target:  5'- cGCCCUCGCGGCcGUAGAucgccGCGAGc -3'
miRNA:   3'- uUGGGGGUGCCGcCAUCUca---CGCUCa -5'
15888 5' -60 NC_004065.1 + 33870 0.68 0.704397
Target:  5'- gAGCCCCCAgaUGGCGG-AGucccagGCGAGg -3'
miRNA:   3'- -UUGGGGGU--GCCGCCaUCuca---CGCUCa -5'
15888 5' -60 NC_004065.1 + 151392 0.68 0.685119
Target:  5'- cGAUCUCUugGGUGGcGGAG-GCGGGUc -3'
miRNA:   3'- -UUGGGGGugCCGCCaUCUCaCGCUCA- -5'
15888 5' -60 NC_004065.1 + 30117 0.71 0.558497
Target:  5'- cAGCCCCgGCGGCcuGG-GGAGgGCGGGUg -3'
miRNA:   3'- -UUGGGGgUGCCG--CCaUCUCaCGCUCA- -5'
15888 5' -60 NC_004065.1 + 208137 0.71 0.529909
Target:  5'- aAACCUCCAa-GUGGUGGAGUGgGGGa -3'
miRNA:   3'- -UUGGGGGUgcCGCCAUCUCACgCUCa -5'
15888 5' -60 NC_004065.1 + 133888 0.73 0.422157
Target:  5'- cGACCCCCACGGaCGacgugaucaUGGAGUGCGAc- -3'
miRNA:   3'- -UUGGGGGUGCC-GCc--------AUCUCACGCUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.