miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15889 3' -54.8 NC_004065.1 + 887 0.66 0.980967
Target:  5'- cCCGCCGGCAUGcuacagGCGUuacgGGuuGAc -3'
miRNA:   3'- -GGCGGCUGUACuaca--UGCA----CCggCUa -5'
15889 3' -54.8 NC_004065.1 + 99142 0.66 0.978833
Target:  5'- gCgGCCGACG-GcgGUAaacacCGUGGCCGc- -3'
miRNA:   3'- -GgCGGCUGUaCuaCAU-----GCACCGGCua -5'
15889 3' -54.8 NC_004065.1 + 191751 0.66 0.976766
Target:  5'- aCGCCGuuuucguuCAUGAUgGUGCGcggaguccagcucagGGCCGAg -3'
miRNA:   3'- gGCGGCu-------GUACUA-CAUGCa--------------CCGGCUa -5'
15889 3' -54.8 NC_004065.1 + 101092 0.66 0.976528
Target:  5'- cCCGCCGA--UGAUcuUACGUGcGCCGu- -3'
miRNA:   3'- -GGCGGCUguACUAc-AUGCAC-CGGCua -5'
15889 3' -54.8 NC_004065.1 + 48620 0.66 0.976528
Target:  5'- aCCGUCGACGaGAaGUAUG-GGCgCGAc -3'
miRNA:   3'- -GGCGGCUGUaCUaCAUGCaCCG-GCUa -5'
15889 3' -54.8 NC_004065.1 + 77121 0.66 0.975801
Target:  5'- gCCGCCGACAucgucagacggggcUGcgGUugG-GGuuGGg -3'
miRNA:   3'- -GGCGGCUGU--------------ACuaCAugCaCCggCUa -5'
15889 3' -54.8 NC_004065.1 + 20005 0.66 0.974043
Target:  5'- gCCGCgUGugGUGAUGUuCGUGcGaCCGGc -3'
miRNA:   3'- -GGCG-GCugUACUACAuGCAC-C-GGCUa -5'
15889 3' -54.8 NC_004065.1 + 114879 0.66 0.974043
Target:  5'- gCCGCCGGCcgGcgGUucCGaGGCCa-- -3'
miRNA:   3'- -GGCGGCUGuaCuaCAu-GCaCCGGcua -5'
15889 3' -54.8 NC_004065.1 + 99312 0.66 0.974043
Target:  5'- gCC-CCGAUGUcGAUGUugGUGggcucGCCGAa -3'
miRNA:   3'- -GGcGGCUGUA-CUACAugCAC-----CGGCUa -5'
15889 3' -54.8 NC_004065.1 + 32104 0.66 0.974043
Target:  5'- gCCGaCCGACgAUGAggacUACGUGcccGCCGAUu -3'
miRNA:   3'- -GGC-GGCUG-UACUac--AUGCAC---CGGCUA- -5'
15889 3' -54.8 NC_004065.1 + 27904 0.66 0.971373
Target:  5'- cCUGCCGACGggcGA-GUGgGUGGUCGu- -3'
miRNA:   3'- -GGCGGCUGUa--CUaCAUgCACCGGCua -5'
15889 3' -54.8 NC_004065.1 + 82682 0.66 0.971373
Target:  5'- -gGCCGagaggcGCAgcAUGUGCGUGGCCa-- -3'
miRNA:   3'- ggCGGC------UGUacUACAUGCACCGGcua -5'
15889 3' -54.8 NC_004065.1 + 116836 0.66 0.968511
Target:  5'- -gGCCGugAUGGUgGUGCaGUGgguGCCGAa -3'
miRNA:   3'- ggCGGCugUACUA-CAUG-CAC---CGGCUa -5'
15889 3' -54.8 NC_004065.1 + 161802 0.66 0.968214
Target:  5'- aCCGCCGACGcgcucacccgcUGAgacagguaagucuUGUacaGCGgcggGGCCGAc -3'
miRNA:   3'- -GGCGGCUGU-----------ACU-------------ACA---UGCa---CCGGCUa -5'
15889 3' -54.8 NC_004065.1 + 66556 0.67 0.965451
Target:  5'- gCCGCCGACGgagcucGAgcUACccaucgaaGUGGCCGAc -3'
miRNA:   3'- -GGCGGCUGUa-----CUacAUG--------CACCGGCUa -5'
15889 3' -54.8 NC_004065.1 + 59334 0.67 0.965451
Target:  5'- gCCGCgGGCGgcgugcGAUuuccagcuccgaGUGCGUGGUCGAc -3'
miRNA:   3'- -GGCGgCUGUa-----CUA------------CAUGCACCGGCUa -5'
15889 3' -54.8 NC_004065.1 + 88417 0.67 0.962523
Target:  5'- aCCGCCGGCAgcgGAgcccgccgccgucgcGUugGUGGCgGu- -3'
miRNA:   3'- -GGCGGCUGUa--CUa--------------CAugCACCGgCua -5'
15889 3' -54.8 NC_004065.1 + 132152 0.67 0.96185
Target:  5'- gCGCCGAgccuggaCGUGGUGgcgGCGaUGGCgGAc -3'
miRNA:   3'- gGCGGCU-------GUACUACa--UGC-ACCGgCUa -5'
15889 3' -54.8 NC_004065.1 + 154918 0.67 0.956531
Target:  5'- gCCGCCGGauCGUGAauaugaugaaaauugUGUAUucUGGCCGGUg -3'
miRNA:   3'- -GGCGGCU--GUACU---------------ACAUGc-ACCGGCUA- -5'
15889 3' -54.8 NC_004065.1 + 162582 0.68 0.947011
Target:  5'- uCgGCCGACAgguccgucGUGUGCG-GGUCGAa -3'
miRNA:   3'- -GgCGGCUGUac------UACAUGCaCCGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.