miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15889 3' -54.8 NC_004065.1 + 42381 1.08 0.00682
Target:  5'- cCCGCCGACAUGAUGUACGUGGCCGAUg -3'
miRNA:   3'- -GGCGGCUGUACUACAUGCACCGGCUA- -5'
15889 3' -54.8 NC_004065.1 + 59738 0.76 0.558999
Target:  5'- cCCGgCGGCgAUGGUGccgaccGCGUGGCCGAUg -3'
miRNA:   3'- -GGCgGCUG-UACUACa-----UGCACCGGCUA- -5'
15889 3' -54.8 NC_004065.1 + 183853 0.75 0.638537
Target:  5'- aCGCCGucGCGUGuuUGgcCGUGGCCGAa -3'
miRNA:   3'- gGCGGC--UGUACu-ACauGCACCGGCUa -5'
15889 3' -54.8 NC_004065.1 + 6670 0.73 0.707965
Target:  5'- cCCGCau-CGUGGgaagGUACGUGGCUGGUg -3'
miRNA:   3'- -GGCGgcuGUACUa---CAUGCACCGGCUA- -5'
15889 3' -54.8 NC_004065.1 + 139711 0.73 0.736965
Target:  5'- gCGCUuGCcgGAUGagggACGUGGCCGAg -3'
miRNA:   3'- gGCGGcUGuaCUACa---UGCACCGGCUa -5'
15889 3' -54.8 NC_004065.1 + 47284 0.71 0.834855
Target:  5'- uUCGCCGACGUGucgGUGgccccgGCGUcgcccgugaGGCCGAUc -3'
miRNA:   3'- -GGCGGCUGUAC---UACa-----UGCA---------CCGGCUA- -5'
15889 3' -54.8 NC_004065.1 + 69474 0.71 0.842851
Target:  5'- gCGCCGGC-UGcgGUACGcGGCCa-- -3'
miRNA:   3'- gGCGGCUGuACuaCAUGCaCCGGcua -5'
15889 3' -54.8 NC_004065.1 + 102091 0.7 0.850664
Target:  5'- aCGCCGACGcGGgcgGCGaUGGCCGGa -3'
miRNA:   3'- gGCGGCUGUaCUacaUGC-ACCGGCUa -5'
15889 3' -54.8 NC_004065.1 + 208022 0.7 0.865717
Target:  5'- gUGCCGGCGgcGAUGaccgucgGCGUGGCCGu- -3'
miRNA:   3'- gGCGGCUGUa-CUACa------UGCACCGGCua -5'
15889 3' -54.8 NC_004065.1 + 164756 0.7 0.872945
Target:  5'- gCCGCgGcCGUGcgGUACGUGGCg--- -3'
miRNA:   3'- -GGCGgCuGUACuaCAUGCACCGgcua -5'
15889 3' -54.8 NC_004065.1 + 31841 0.69 0.893375
Target:  5'- -gGCCGACcacGUGAU---CGUGGCCGAc -3'
miRNA:   3'- ggCGGCUG---UACUAcauGCACCGGCUa -5'
15889 3' -54.8 NC_004065.1 + 36547 0.69 0.893375
Target:  5'- aCCGCCGACAUcGggGUcuacuacgucaACGUGaCCGAg -3'
miRNA:   3'- -GGCGGCUGUA-CuaCA-----------UGCACcGGCUa -5'
15889 3' -54.8 NC_004065.1 + 41381 0.69 0.90591
Target:  5'- aCCGCUGGuCGUGGUGUgguACGUGcucgccGCCGGc -3'
miRNA:   3'- -GGCGGCU-GUACUACA---UGCAC------CGGCUa -5'
15889 3' -54.8 NC_004065.1 + 140277 0.69 0.911843
Target:  5'- aCGCCG-CGUc--GUACGUGGUCGAc -3'
miRNA:   3'- gGCGGCuGUAcuaCAUGCACCGGCUa -5'
15889 3' -54.8 NC_004065.1 + 83480 0.69 0.91755
Target:  5'- aCGCCGAC--GAUGU-CGggcaGGCCGAc -3'
miRNA:   3'- gGCGGCUGuaCUACAuGCa---CCGGCUa -5'
15889 3' -54.8 NC_004065.1 + 106991 0.68 0.923029
Target:  5'- cUCGCCG-CGUGcAUcccugacgaGUACGUGGCCGc- -3'
miRNA:   3'- -GGCGGCuGUAC-UA---------CAUGCACCGGCua -5'
15889 3' -54.8 NC_004065.1 + 53366 0.68 0.935249
Target:  5'- cCCGCCGACcuUGAUcuacagacagagaucGUACGUGgaggcGCCGGg -3'
miRNA:   3'- -GGCGGCUGu-ACUA---------------CAUGCAC-----CGGCUa -5'
15889 3' -54.8 NC_004065.1 + 129403 0.68 0.939954
Target:  5'- gCCGCCGACGcUGAuggggcugcugaagcUGUGCGccucGGaCCGGUa -3'
miRNA:   3'- -GGCGGCUGU-ACU---------------ACAUGCa---CC-GGCUA- -5'
15889 3' -54.8 NC_004065.1 + 162582 0.68 0.947011
Target:  5'- uCgGCCGACAgguccgucGUGUGCG-GGUCGAa -3'
miRNA:   3'- -GgCGGCUGUac------UACAUGCaCCGGCUa -5'
15889 3' -54.8 NC_004065.1 + 154918 0.67 0.956531
Target:  5'- gCCGCCGGauCGUGAauaugaugaaaauugUGUAUucUGGCCGGUg -3'
miRNA:   3'- -GGCGGCU--GUACU---------------ACAUGc-ACCGGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.