Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15889 | 3' | -54.8 | NC_004065.1 | + | 887 | 0.66 | 0.980967 |
Target: 5'- cCCGCCGGCAUGcuacagGCGUuacgGGuuGAc -3' miRNA: 3'- -GGCGGCUGUACuaca--UGCA----CCggCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 6670 | 0.73 | 0.707965 |
Target: 5'- cCCGCau-CGUGGgaagGUACGUGGCUGGUg -3' miRNA: 3'- -GGCGgcuGUACUa---CAUGCACCGGCUA- -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 20005 | 0.66 | 0.974043 |
Target: 5'- gCCGCgUGugGUGAUGUuCGUGcGaCCGGc -3' miRNA: 3'- -GGCG-GCugUACUACAuGCAC-C-GGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 27904 | 0.66 | 0.971373 |
Target: 5'- cCUGCCGACGggcGA-GUGgGUGGUCGu- -3' miRNA: 3'- -GGCGGCUGUa--CUaCAUgCACCGGCua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 31841 | 0.69 | 0.893375 |
Target: 5'- -gGCCGACcacGUGAU---CGUGGCCGAc -3' miRNA: 3'- ggCGGCUG---UACUAcauGCACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 32104 | 0.66 | 0.974043 |
Target: 5'- gCCGaCCGACgAUGAggacUACGUGcccGCCGAUu -3' miRNA: 3'- -GGC-GGCUG-UACUac--AUGCAC---CGGCUA- -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 36547 | 0.69 | 0.893375 |
Target: 5'- aCCGCCGACAUcGggGUcuacuacgucaACGUGaCCGAg -3' miRNA: 3'- -GGCGGCUGUA-CuaCA-----------UGCACcGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 41381 | 0.69 | 0.90591 |
Target: 5'- aCCGCUGGuCGUGGUGUgguACGUGcucgccGCCGGc -3' miRNA: 3'- -GGCGGCU-GUACUACA---UGCAC------CGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 42381 | 1.08 | 0.00682 |
Target: 5'- cCCGCCGACAUGAUGUACGUGGCCGAUg -3' miRNA: 3'- -GGCGGCUGUACUACAUGCACCGGCUA- -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 47284 | 0.71 | 0.834855 |
Target: 5'- uUCGCCGACGUGucgGUGgccccgGCGUcgcccgugaGGCCGAUc -3' miRNA: 3'- -GGCGGCUGUAC---UACa-----UGCA---------CCGGCUA- -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 48620 | 0.66 | 0.976528 |
Target: 5'- aCCGUCGACGaGAaGUAUG-GGCgCGAc -3' miRNA: 3'- -GGCGGCUGUaCUaCAUGCaCCG-GCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 53366 | 0.68 | 0.935249 |
Target: 5'- cCCGCCGACcuUGAUcuacagacagagaucGUACGUGgaggcGCCGGg -3' miRNA: 3'- -GGCGGCUGu-ACUA---------------CAUGCAC-----CGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 59334 | 0.67 | 0.965451 |
Target: 5'- gCCGCgGGCGgcgugcGAUuuccagcuccgaGUGCGUGGUCGAc -3' miRNA: 3'- -GGCGgCUGUa-----CUA------------CAUGCACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 59738 | 0.76 | 0.558999 |
Target: 5'- cCCGgCGGCgAUGGUGccgaccGCGUGGCCGAUg -3' miRNA: 3'- -GGCgGCUG-UACUACa-----UGCACCGGCUA- -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 66556 | 0.67 | 0.965451 |
Target: 5'- gCCGCCGACGgagcucGAgcUACccaucgaaGUGGCCGAc -3' miRNA: 3'- -GGCGGCUGUa-----CUacAUG--------CACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 69474 | 0.71 | 0.842851 |
Target: 5'- gCGCCGGC-UGcgGUACGcGGCCa-- -3' miRNA: 3'- gGCGGCUGuACuaCAUGCaCCGGcua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 77121 | 0.66 | 0.975801 |
Target: 5'- gCCGCCGACAucgucagacggggcUGcgGUugG-GGuuGGg -3' miRNA: 3'- -GGCGGCUGU--------------ACuaCAugCaCCggCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 82682 | 0.66 | 0.971373 |
Target: 5'- -gGCCGagaggcGCAgcAUGUGCGUGGCCa-- -3' miRNA: 3'- ggCGGC------UGUacUACAUGCACCGGcua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 83480 | 0.69 | 0.91755 |
Target: 5'- aCGCCGAC--GAUGU-CGggcaGGCCGAc -3' miRNA: 3'- gGCGGCUGuaCUACAuGCa---CCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 88417 | 0.67 | 0.962523 |
Target: 5'- aCCGCCGGCAgcgGAgcccgccgccgucgcGUugGUGGCgGu- -3' miRNA: 3'- -GGCGGCUGUa--CUa--------------CAugCACCGgCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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