Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15889 | 3' | -54.8 | NC_004065.1 | + | 99142 | 0.66 | 0.978833 |
Target: 5'- gCgGCCGACG-GcgGUAaacacCGUGGCCGc- -3' miRNA: 3'- -GgCGGCUGUaCuaCAU-----GCACCGGCua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 99312 | 0.66 | 0.974043 |
Target: 5'- gCC-CCGAUGUcGAUGUugGUGggcucGCCGAa -3' miRNA: 3'- -GGcGGCUGUA-CUACAugCAC-----CGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 101092 | 0.66 | 0.976528 |
Target: 5'- cCCGCCGA--UGAUcuUACGUGcGCCGu- -3' miRNA: 3'- -GGCGGCUguACUAc-AUGCAC-CGGCua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 102091 | 0.7 | 0.850664 |
Target: 5'- aCGCCGACGcGGgcgGCGaUGGCCGGa -3' miRNA: 3'- gGCGGCUGUaCUacaUGC-ACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 106991 | 0.68 | 0.923029 |
Target: 5'- cUCGCCG-CGUGcAUcccugacgaGUACGUGGCCGc- -3' miRNA: 3'- -GGCGGCuGUAC-UA---------CAUGCACCGGCua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 114879 | 0.66 | 0.974043 |
Target: 5'- gCCGCCGGCcgGcgGUucCGaGGCCa-- -3' miRNA: 3'- -GGCGGCUGuaCuaCAu-GCaCCGGcua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 116836 | 0.66 | 0.968511 |
Target: 5'- -gGCCGugAUGGUgGUGCaGUGgguGCCGAa -3' miRNA: 3'- ggCGGCugUACUA-CAUG-CAC---CGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 129403 | 0.68 | 0.939954 |
Target: 5'- gCCGCCGACGcUGAuggggcugcugaagcUGUGCGccucGGaCCGGUa -3' miRNA: 3'- -GGCGGCUGU-ACU---------------ACAUGCa---CC-GGCUA- -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 132152 | 0.67 | 0.96185 |
Target: 5'- gCGCCGAgccuggaCGUGGUGgcgGCGaUGGCgGAc -3' miRNA: 3'- gGCGGCU-------GUACUACa--UGC-ACCGgCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 139711 | 0.73 | 0.736965 |
Target: 5'- gCGCUuGCcgGAUGagggACGUGGCCGAg -3' miRNA: 3'- gGCGGcUGuaCUACa---UGCACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 140277 | 0.69 | 0.911843 |
Target: 5'- aCGCCG-CGUc--GUACGUGGUCGAc -3' miRNA: 3'- gGCGGCuGUAcuaCAUGCACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 154918 | 0.67 | 0.956531 |
Target: 5'- gCCGCCGGauCGUGAauaugaugaaaauugUGUAUucUGGCCGGUg -3' miRNA: 3'- -GGCGGCU--GUACU---------------ACAUGc-ACCGGCUA- -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 161802 | 0.66 | 0.968214 |
Target: 5'- aCCGCCGACGcgcucacccgcUGAgacagguaagucuUGUacaGCGgcggGGCCGAc -3' miRNA: 3'- -GGCGGCUGU-----------ACU-------------ACA---UGCa---CCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 162582 | 0.68 | 0.947011 |
Target: 5'- uCgGCCGACAgguccgucGUGUGCG-GGUCGAa -3' miRNA: 3'- -GgCGGCUGUac------UACAUGCaCCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 164756 | 0.7 | 0.872945 |
Target: 5'- gCCGCgGcCGUGcgGUACGUGGCg--- -3' miRNA: 3'- -GGCGgCuGUACuaCAUGCACCGgcua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 183853 | 0.75 | 0.638537 |
Target: 5'- aCGCCGucGCGUGuuUGgcCGUGGCCGAa -3' miRNA: 3'- gGCGGC--UGUACu-ACauGCACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 191751 | 0.66 | 0.976766 |
Target: 5'- aCGCCGuuuucguuCAUGAUgGUGCGcggaguccagcucagGGCCGAg -3' miRNA: 3'- gGCGGCu-------GUACUA-CAUGCa--------------CCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 208022 | 0.7 | 0.865717 |
Target: 5'- gUGCCGGCGgcGAUGaccgucgGCGUGGCCGu- -3' miRNA: 3'- gGCGGCUGUa-CUACa------UGCACCGGCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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