Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15889 | 3' | -54.8 | NC_004065.1 | + | 6670 | 0.73 | 0.707965 |
Target: 5'- cCCGCau-CGUGGgaagGUACGUGGCUGGUg -3' miRNA: 3'- -GGCGgcuGUACUa---CAUGCACCGGCUA- -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 99142 | 0.66 | 0.978833 |
Target: 5'- gCgGCCGACG-GcgGUAaacacCGUGGCCGc- -3' miRNA: 3'- -GgCGGCUGUaCuaCAU-----GCACCGGCua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 48620 | 0.66 | 0.976528 |
Target: 5'- aCCGUCGACGaGAaGUAUG-GGCgCGAc -3' miRNA: 3'- -GGCGGCUGUaCUaCAUGCaCCG-GCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 116836 | 0.66 | 0.968511 |
Target: 5'- -gGCCGugAUGGUgGUGCaGUGgguGCCGAa -3' miRNA: 3'- ggCGGCugUACUA-CAUG-CAC---CGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 88417 | 0.67 | 0.962523 |
Target: 5'- aCCGCCGGCAgcgGAgcccgccgccgucgcGUugGUGGCgGu- -3' miRNA: 3'- -GGCGGCUGUa--CUa--------------CAugCACCGgCua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 154918 | 0.67 | 0.956531 |
Target: 5'- gCCGCCGGauCGUGAauaugaugaaaauugUGUAUucUGGCCGGUg -3' miRNA: 3'- -GGCGGCU--GUACU---------------ACAUGc-ACCGGCUA- -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 106991 | 0.68 | 0.923029 |
Target: 5'- cUCGCCG-CGUGcAUcccugacgaGUACGUGGCCGc- -3' miRNA: 3'- -GGCGGCuGUAC-UA---------CAUGCACCGGCua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 69474 | 0.71 | 0.842851 |
Target: 5'- gCGCCGGC-UGcgGUACGcGGCCa-- -3' miRNA: 3'- gGCGGCUGuACuaCAUGCaCCGGcua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 47284 | 0.71 | 0.834855 |
Target: 5'- uUCGCCGACGUGucgGUGgccccgGCGUcgcccgugaGGCCGAUc -3' miRNA: 3'- -GGCGGCUGUAC---UACa-----UGCA---------CCGGCUA- -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 139711 | 0.73 | 0.736965 |
Target: 5'- gCGCUuGCcgGAUGagggACGUGGCCGAg -3' miRNA: 3'- gGCGGcUGuaCUACa---UGCACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 140277 | 0.69 | 0.911843 |
Target: 5'- aCGCCG-CGUc--GUACGUGGUCGAc -3' miRNA: 3'- gGCGGCuGUAcuaCAUGCACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 41381 | 0.69 | 0.90591 |
Target: 5'- aCCGCUGGuCGUGGUGUgguACGUGcucgccGCCGGc -3' miRNA: 3'- -GGCGGCU-GUACUACA---UGCAC------CGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 36547 | 0.69 | 0.893375 |
Target: 5'- aCCGCCGACAUcGggGUcuacuacgucaACGUGaCCGAg -3' miRNA: 3'- -GGCGGCUGUA-CuaCA-----------UGCACcGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 31841 | 0.69 | 0.893375 |
Target: 5'- -gGCCGACcacGUGAU---CGUGGCCGAc -3' miRNA: 3'- ggCGGCUG---UACUAcauGCACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 164756 | 0.7 | 0.872945 |
Target: 5'- gCCGCgGcCGUGcgGUACGUGGCg--- -3' miRNA: 3'- -GGCGgCuGUACuaCAUGCACCGgcua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 208022 | 0.7 | 0.865717 |
Target: 5'- gUGCCGGCGgcGAUGaccgucgGCGUGGCCGu- -3' miRNA: 3'- gGCGGCUGUa-CUACa------UGCACCGGCua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 102091 | 0.7 | 0.850664 |
Target: 5'- aCGCCGACGcGGgcgGCGaUGGCCGGa -3' miRNA: 3'- gGCGGCUGUaCUacaUGC-ACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 183853 | 0.75 | 0.638537 |
Target: 5'- aCGCCGucGCGUGuuUGgcCGUGGCCGAa -3' miRNA: 3'- gGCGGC--UGUACu-ACauGCACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 59738 | 0.76 | 0.558999 |
Target: 5'- cCCGgCGGCgAUGGUGccgaccGCGUGGCCGAUg -3' miRNA: 3'- -GGCgGCUG-UACUACa-----UGCACCGGCUA- -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 887 | 0.66 | 0.980967 |
Target: 5'- cCCGCCGGCAUGcuacagGCGUuacgGGuuGAc -3' miRNA: 3'- -GGCGGCUGUACuaca--UGCA----CCggCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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