Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15889 | 3' | -54.8 | NC_004065.1 | + | 53366 | 0.68 | 0.935249 |
Target: 5'- cCCGCCGACcuUGAUcuacagacagagaucGUACGUGgaggcGCCGGg -3' miRNA: 3'- -GGCGGCUGu-ACUA---------------CAUGCAC-----CGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 183853 | 0.75 | 0.638537 |
Target: 5'- aCGCCGucGCGUGuuUGgcCGUGGCCGAa -3' miRNA: 3'- gGCGGC--UGUACu-ACauGCACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 102091 | 0.7 | 0.850664 |
Target: 5'- aCGCCGACGcGGgcgGCGaUGGCCGGa -3' miRNA: 3'- gGCGGCUGUaCUacaUGC-ACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 208022 | 0.7 | 0.865717 |
Target: 5'- gUGCCGGCGgcGAUGaccgucgGCGUGGCCGu- -3' miRNA: 3'- gGCGGCUGUa-CUACa------UGCACCGGCua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 164756 | 0.7 | 0.872945 |
Target: 5'- gCCGCgGcCGUGcgGUACGUGGCg--- -3' miRNA: 3'- -GGCGgCuGUACuaCAUGCACCGgcua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 31841 | 0.69 | 0.893375 |
Target: 5'- -gGCCGACcacGUGAU---CGUGGCCGAc -3' miRNA: 3'- ggCGGCUG---UACUAcauGCACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 36547 | 0.69 | 0.893375 |
Target: 5'- aCCGCCGACAUcGggGUcuacuacgucaACGUGaCCGAg -3' miRNA: 3'- -GGCGGCUGUA-CuaCA-----------UGCACcGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 41381 | 0.69 | 0.90591 |
Target: 5'- aCCGCUGGuCGUGGUGUgguACGUGcucgccGCCGGc -3' miRNA: 3'- -GGCGGCU-GUACUACA---UGCAC------CGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 140277 | 0.69 | 0.911843 |
Target: 5'- aCGCCG-CGUc--GUACGUGGUCGAc -3' miRNA: 3'- gGCGGCuGUAcuaCAUGCACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 59738 | 0.76 | 0.558999 |
Target: 5'- cCCGgCGGCgAUGGUGccgaccGCGUGGCCGAUg -3' miRNA: 3'- -GGCgGCUG-UACUACa-----UGCACCGGCUA- -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 42381 | 1.08 | 0.00682 |
Target: 5'- cCCGCCGACAUGAUGUACGUGGCCGAUg -3' miRNA: 3'- -GGCGGCUGUACUACAUGCACCGGCUA- -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 161802 | 0.66 | 0.968214 |
Target: 5'- aCCGCCGACGcgcucacccgcUGAgacagguaagucuUGUacaGCGgcggGGCCGAc -3' miRNA: 3'- -GGCGGCUGU-----------ACU-------------ACA---UGCa---CCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 129403 | 0.68 | 0.939954 |
Target: 5'- gCCGCCGACGcUGAuggggcugcugaagcUGUGCGccucGGaCCGGUa -3' miRNA: 3'- -GGCGGCUGU-ACU---------------ACAUGCa---CC-GGCUA- -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 82682 | 0.66 | 0.971373 |
Target: 5'- -gGCCGagaggcGCAgcAUGUGCGUGGCCa-- -3' miRNA: 3'- ggCGGC------UGUacUACAUGCACCGGcua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 162582 | 0.68 | 0.947011 |
Target: 5'- uCgGCCGACAgguccgucGUGUGCG-GGUCGAa -3' miRNA: 3'- -GgCGGCUGUac------UACAUGCaCCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 59334 | 0.67 | 0.965451 |
Target: 5'- gCCGCgGGCGgcgugcGAUuuccagcuccgaGUGCGUGGUCGAc -3' miRNA: 3'- -GGCGgCUGUa-----CUA------------CAUGCACCGGCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 27904 | 0.66 | 0.971373 |
Target: 5'- cCUGCCGACGggcGA-GUGgGUGGUCGu- -3' miRNA: 3'- -GGCGGCUGUa--CUaCAUgCACCGGCua -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 887 | 0.66 | 0.980967 |
Target: 5'- cCCGCCGGCAUGcuacagGCGUuacgGGuuGAc -3' miRNA: 3'- -GGCGGCUGUACuaca--UGCA----CCggCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 132152 | 0.67 | 0.96185 |
Target: 5'- gCGCCGAgccuggaCGUGGUGgcgGCGaUGGCgGAc -3' miRNA: 3'- gGCGGCU-------GUACUACa--UGC-ACCGgCUa -5' |
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15889 | 3' | -54.8 | NC_004065.1 | + | 66556 | 0.67 | 0.965451 |
Target: 5'- gCCGCCGACGgagcucGAgcUACccaucgaaGUGGCCGAc -3' miRNA: 3'- -GGCGGCUGUa-----CUacAUG--------CACCGGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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