Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15889 | 5' | -56.2 | NC_004065.1 | + | 182471 | 0.66 | 0.944966 |
Target: 5'- ----gGCCugGgUcgCugGGUGGGCGGu -3' miRNA: 3'- cuuagCGGugC-GuaGugCCACCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 41237 | 0.66 | 0.940466 |
Target: 5'- -cAUCGUgCACGCGUUggugaucaGCGuGUGGGCGGu -3' miRNA: 3'- cuUAGCG-GUGCGUAG--------UGC-CACCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 210588 | 0.66 | 0.940466 |
Target: 5'- -cAUCGCCA-GCAgCGCGGUGccuccGGCAc -3' miRNA: 3'- cuUAGCGGUgCGUaGUGCCAC-----CCGUu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 185196 | 0.66 | 0.935736 |
Target: 5'- -uGUCGCUgucCGUGUCGCGGUGguGGCGc -3' miRNA: 3'- cuUAGCGGu--GCGUAGUGCCAC--CCGUu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 92528 | 0.66 | 0.930773 |
Target: 5'- --cUCGCgCGCGCGU-ACGGgcGGGCGGg -3' miRNA: 3'- cuuAGCG-GUGCGUAgUGCCa-CCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 52504 | 0.66 | 0.930773 |
Target: 5'- -uGUUGgCGCGCgGUgGCGGUGGuGCAGa -3' miRNA: 3'- cuUAGCgGUGCG-UAgUGCCACC-CGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 72600 | 0.66 | 0.930264 |
Target: 5'- gGggUCG-UACGUGUUcgcgaucccgaugACGGUGGGCAu -3' miRNA: 3'- -CuuAGCgGUGCGUAG-------------UGCCACCCGUu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 142013 | 0.66 | 0.925576 |
Target: 5'- cGGAUCGUCgACGaCGUCgucgucgacgACGGUGGGgGAu -3' miRNA: 3'- -CUUAGCGG-UGC-GUAG----------UGCCACCCgUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 140728 | 0.66 | 0.925576 |
Target: 5'- ---cUGCCGCGCucgGUCAacGUGGGCAAg -3' miRNA: 3'- cuuaGCGGUGCG---UAGUgcCACCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 133999 | 0.66 | 0.925576 |
Target: 5'- ---gUGcCCACGCA-CGCGG-GGGCGGu -3' miRNA: 3'- cuuaGC-GGUGCGUaGUGCCaCCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 114499 | 0.66 | 0.925576 |
Target: 5'- ---cCGCC-CGCAUCACGGUGa-CAGa -3' miRNA: 3'- cuuaGCGGuGCGUAGUGCCACccGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 44061 | 0.66 | 0.920147 |
Target: 5'- -cAUCGCCAucuccuucaacCGCAUCACGuacGUGGcGCGc -3' miRNA: 3'- cuUAGCGGU-----------GCGUAGUGC---CACC-CGUu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 44429 | 0.66 | 0.919591 |
Target: 5'- aGAUcCGCCAguacaccagcucCGCGUucgucuugaacgaCGCGGUGGGCAc -3' miRNA: 3'- cUUA-GCGGU------------GCGUA-------------GUGCCACCCGUu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 81139 | 0.67 | 0.913906 |
Target: 5'- aGAUCGUgA-GCAUCACGGUGucggacaGGCAGa -3' miRNA: 3'- cUUAGCGgUgCGUAGUGCCAC-------CCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 66639 | 0.67 | 0.889541 |
Target: 5'- -cAUCGUCG-GCuucggCGCGGUGGGCGc -3' miRNA: 3'- cuUAGCGGUgCGua---GUGCCACCCGUu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 8700 | 0.67 | 0.889541 |
Target: 5'- uGGUCGCCaguaGCGCGUUAgGG-GGGCc- -3' miRNA: 3'- cUUAGCGG----UGCGUAGUgCCaCCCGuu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 45817 | 0.67 | 0.889541 |
Target: 5'- ---aCGCCGCGUG-CG-GGUGGGCAu -3' miRNA: 3'- cuuaGCGGUGCGUaGUgCCACCCGUu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 97925 | 0.67 | 0.88549 |
Target: 5'- cGAAcCGCCGCGCGUcCggcaccggcguggcaGCGGUGGGgAc -3' miRNA: 3'- -CUUaGCGGUGCGUA-G---------------UGCCACCCgUu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 200780 | 0.67 | 0.882745 |
Target: 5'- --cUCGUCGCGCG--GCGGUggcGGGCGAc -3' miRNA: 3'- cuuAGCGGUGCGUagUGCCA---CCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 62109 | 0.68 | 0.868505 |
Target: 5'- cGGUCGUUACGC-UCGCGGgagGcGGCAu -3' miRNA: 3'- cUUAGCGGUGCGuAGUGCCa--C-CCGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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