Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15889 | 5' | -56.2 | NC_004065.1 | + | 42416 | 1.06 | 0.00581 |
Target: 5'- gGAAUCGCCACGCAUCACGGUGGGCAAg -3' miRNA: 3'- -CUUAGCGGUGCGUAGUGCCACCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 104577 | 0.88 | 0.080338 |
Target: 5'- ---aCGCCGCGCAUCAUGGUGGGUAAc -3' miRNA: 3'- cuuaGCGGUGCGUAGUGCCACCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 133449 | 0.78 | 0.345369 |
Target: 5'- -cGUCGCCACGCGUCGCGGcucgucGGCGGa -3' miRNA: 3'- cuUAGCGGUGCGUAGUGCCac----CCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 104886 | 0.75 | 0.498906 |
Target: 5'- uGAUCGCCACGCGgcugggcgacggCGCGGUGGuGCc- -3' miRNA: 3'- cUUAGCGGUGCGUa-----------GUGCCACC-CGuu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 200523 | 0.72 | 0.629556 |
Target: 5'- cGGAUCGCCGCGCAcagggcgucCAUGGcgaGGGCGAc -3' miRNA: 3'- -CUUAGCGGUGCGUa--------GUGCCa--CCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 179736 | 0.71 | 0.719635 |
Target: 5'- cGAUCGCCGCGCGgacgGCGGUcucgGGGCc- -3' miRNA: 3'- cUUAGCGGUGCGUag--UGCCA----CCCGuu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 120328 | 0.7 | 0.748655 |
Target: 5'- aGggUCGCCGCGCgAUCuCGGc-GGCGAu -3' miRNA: 3'- -CuuAGCGGUGCG-UAGuGCCacCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 193383 | 0.7 | 0.748655 |
Target: 5'- cGAUCGCCgACGUugAUCugGG-GGGCGu -3' miRNA: 3'- cUUAGCGG-UGCG--UAGugCCaCCCGUu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 62691 | 0.7 | 0.758141 |
Target: 5'- ---cCGCCGCGUugGUCGCGGUcuugGGGUAGc -3' miRNA: 3'- cuuaGCGGUGCG--UAGUGCCA----CCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 203303 | 0.69 | 0.794909 |
Target: 5'- cGAAUCGUCGCGCGaaguaGGUGGGUc- -3' miRNA: 3'- -CUUAGCGGUGCGUagug-CCACCCGuu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 111940 | 0.69 | 0.803764 |
Target: 5'- ---gCGCCGC-CGUCGCGGUGGaCGAu -3' miRNA: 3'- cuuaGCGGUGcGUAGUGCCACCcGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 110844 | 0.69 | 0.829388 |
Target: 5'- aGAcUCGCuCACGgcCAUCcugGCGGUGGGUAAc -3' miRNA: 3'- -CUuAGCG-GUGC--GUAG---UGCCACCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 30811 | 0.68 | 0.853438 |
Target: 5'- -uGUCGUCAC-CGUCGCGGUGcGCGu -3' miRNA: 3'- cuUAGCGGUGcGUAGUGCCACcCGUu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 66091 | 0.68 | 0.853438 |
Target: 5'- cGAGUCGUuccugCACGCG-CugGG-GGGCGAc -3' miRNA: 3'- -CUUAGCG-----GUGCGUaGugCCaCCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 26049 | 0.68 | 0.861073 |
Target: 5'- uAGUCGCCAUGUucGUCGCGGUaacGGCc- -3' miRNA: 3'- cUUAGCGGUGCG--UAGUGCCAc--CCGuu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 171637 | 0.68 | 0.868505 |
Target: 5'- aGAA-C-CUGCGCAUCACGGUGaGGCc- -3' miRNA: 3'- -CUUaGcGGUGCGUAGUGCCAC-CCGuu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 62109 | 0.68 | 0.868505 |
Target: 5'- cGGUCGUUACGC-UCGCGGgagGcGGCAu -3' miRNA: 3'- cUUAGCGGUGCGuAGUGCCa--C-CCGUu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 200780 | 0.67 | 0.882745 |
Target: 5'- --cUCGUCGCGCG--GCGGUggcGGGCGAc -3' miRNA: 3'- cuuAGCGGUGCGUagUGCCA---CCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 97925 | 0.67 | 0.88549 |
Target: 5'- cGAAcCGCCGCGCGUcCggcaccggcguggcaGCGGUGGGgAc -3' miRNA: 3'- -CUUaGCGGUGCGUA-G---------------UGCCACCCgUu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 45817 | 0.67 | 0.889541 |
Target: 5'- ---aCGCCGCGUG-CG-GGUGGGCAu -3' miRNA: 3'- cuuaGCGGUGCGUaGUgCCACCCGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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