miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15889 5' -56.2 NC_004065.1 + 8700 0.67 0.889541
Target:  5'- uGGUCGCCaguaGCGCGUUAgGG-GGGCc- -3'
miRNA:   3'- cUUAGCGG----UGCGUAGUgCCaCCCGuu -5'
15889 5' -56.2 NC_004065.1 + 26049 0.68 0.861073
Target:  5'- uAGUCGCCAUGUucGUCGCGGUaacGGCc- -3'
miRNA:   3'- cUUAGCGGUGCG--UAGUGCCAc--CCGuu -5'
15889 5' -56.2 NC_004065.1 + 30811 0.68 0.853438
Target:  5'- -uGUCGUCAC-CGUCGCGGUGcGCGu -3'
miRNA:   3'- cuUAGCGGUGcGUAGUGCCACcCGUu -5'
15889 5' -56.2 NC_004065.1 + 41237 0.66 0.940466
Target:  5'- -cAUCGUgCACGCGUUggugaucaGCGuGUGGGCGGu -3'
miRNA:   3'- cuUAGCG-GUGCGUAG--------UGC-CACCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 42416 1.06 0.00581
Target:  5'- gGAAUCGCCACGCAUCACGGUGGGCAAg -3'
miRNA:   3'- -CUUAGCGGUGCGUAGUGCCACCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 44061 0.66 0.920147
Target:  5'- -cAUCGCCAucuccuucaacCGCAUCACGuacGUGGcGCGc -3'
miRNA:   3'- cuUAGCGGU-----------GCGUAGUGC---CACC-CGUu -5'
15889 5' -56.2 NC_004065.1 + 44429 0.66 0.919591
Target:  5'- aGAUcCGCCAguacaccagcucCGCGUucgucuugaacgaCGCGGUGGGCAc -3'
miRNA:   3'- cUUA-GCGGU------------GCGUA-------------GUGCCACCCGUu -5'
15889 5' -56.2 NC_004065.1 + 45817 0.67 0.889541
Target:  5'- ---aCGCCGCGUG-CG-GGUGGGCAu -3'
miRNA:   3'- cuuaGCGGUGCGUaGUgCCACCCGUu -5'
15889 5' -56.2 NC_004065.1 + 52504 0.66 0.930773
Target:  5'- -uGUUGgCGCGCgGUgGCGGUGGuGCAGa -3'
miRNA:   3'- cuUAGCgGUGCG-UAgUGCCACC-CGUU- -5'
15889 5' -56.2 NC_004065.1 + 62109 0.68 0.868505
Target:  5'- cGGUCGUUACGC-UCGCGGgagGcGGCAu -3'
miRNA:   3'- cUUAGCGGUGCGuAGUGCCa--C-CCGUu -5'
15889 5' -56.2 NC_004065.1 + 62691 0.7 0.758141
Target:  5'- ---cCGCCGCGUugGUCGCGGUcuugGGGUAGc -3'
miRNA:   3'- cuuaGCGGUGCG--UAGUGCCA----CCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 66091 0.68 0.853438
Target:  5'- cGAGUCGUuccugCACGCG-CugGG-GGGCGAc -3'
miRNA:   3'- -CUUAGCG-----GUGCGUaGugCCaCCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 66639 0.67 0.889541
Target:  5'- -cAUCGUCG-GCuucggCGCGGUGGGCGc -3'
miRNA:   3'- cuUAGCGGUgCGua---GUGCCACCCGUu -5'
15889 5' -56.2 NC_004065.1 + 72600 0.66 0.930264
Target:  5'- gGggUCG-UACGUGUUcgcgaucccgaugACGGUGGGCAu -3'
miRNA:   3'- -CuuAGCgGUGCGUAG-------------UGCCACCCGUu -5'
15889 5' -56.2 NC_004065.1 + 81139 0.67 0.913906
Target:  5'- aGAUCGUgA-GCAUCACGGUGucggacaGGCAGa -3'
miRNA:   3'- cUUAGCGgUgCGUAGUGCCAC-------CCGUU- -5'
15889 5' -56.2 NC_004065.1 + 92528 0.66 0.930773
Target:  5'- --cUCGCgCGCGCGU-ACGGgcGGGCGGg -3'
miRNA:   3'- cuuAGCG-GUGCGUAgUGCCa-CCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 97925 0.67 0.88549
Target:  5'- cGAAcCGCCGCGCGUcCggcaccggcguggcaGCGGUGGGgAc -3'
miRNA:   3'- -CUUaGCGGUGCGUA-G---------------UGCCACCCgUu -5'
15889 5' -56.2 NC_004065.1 + 104577 0.88 0.080338
Target:  5'- ---aCGCCGCGCAUCAUGGUGGGUAAc -3'
miRNA:   3'- cuuaGCGGUGCGUAGUGCCACCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 104886 0.75 0.498906
Target:  5'- uGAUCGCCACGCGgcugggcgacggCGCGGUGGuGCc- -3'
miRNA:   3'- cUUAGCGGUGCGUa-----------GUGCCACC-CGuu -5'
15889 5' -56.2 NC_004065.1 + 110844 0.69 0.829388
Target:  5'- aGAcUCGCuCACGgcCAUCcugGCGGUGGGUAAc -3'
miRNA:   3'- -CUuAGCG-GUGC--GUAG---UGCCACCCGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.