Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15889 | 5' | -56.2 | NC_004065.1 | + | 111940 | 0.69 | 0.803764 |
Target: 5'- ---gCGCCGC-CGUCGCGGUGGaCGAu -3' miRNA: 3'- cuuaGCGGUGcGUAGUGCCACCcGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 114499 | 0.66 | 0.925576 |
Target: 5'- ---cCGCC-CGCAUCACGGUGa-CAGa -3' miRNA: 3'- cuuaGCGGuGCGUAGUGCCACccGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 120328 | 0.7 | 0.748655 |
Target: 5'- aGggUCGCCGCGCgAUCuCGGc-GGCGAu -3' miRNA: 3'- -CuuAGCGGUGCG-UAGuGCCacCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 133449 | 0.78 | 0.345369 |
Target: 5'- -cGUCGCCACGCGUCGCGGcucgucGGCGGa -3' miRNA: 3'- cuUAGCGGUGCGUAGUGCCac----CCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 133999 | 0.66 | 0.925576 |
Target: 5'- ---gUGcCCACGCA-CGCGG-GGGCGGu -3' miRNA: 3'- cuuaGC-GGUGCGUaGUGCCaCCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 140728 | 0.66 | 0.925576 |
Target: 5'- ---cUGCCGCGCucgGUCAacGUGGGCAAg -3' miRNA: 3'- cuuaGCGGUGCG---UAGUgcCACCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 142013 | 0.66 | 0.925576 |
Target: 5'- cGGAUCGUCgACGaCGUCgucgucgacgACGGUGGGgGAu -3' miRNA: 3'- -CUUAGCGG-UGC-GUAG----------UGCCACCCgUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 171637 | 0.68 | 0.868505 |
Target: 5'- aGAA-C-CUGCGCAUCACGGUGaGGCc- -3' miRNA: 3'- -CUUaGcGGUGCGUAGUGCCAC-CCGuu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 179736 | 0.71 | 0.719635 |
Target: 5'- cGAUCGCCGCGCGgacgGCGGUcucgGGGCc- -3' miRNA: 3'- cUUAGCGGUGCGUag--UGCCA----CCCGuu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 182471 | 0.66 | 0.944966 |
Target: 5'- ----gGCCugGgUcgCugGGUGGGCGGu -3' miRNA: 3'- cuuagCGGugC-GuaGugCCACCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 185196 | 0.66 | 0.935736 |
Target: 5'- -uGUCGCUgucCGUGUCGCGGUGguGGCGc -3' miRNA: 3'- cuUAGCGGu--GCGUAGUGCCAC--CCGUu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 193383 | 0.7 | 0.748655 |
Target: 5'- cGAUCGCCgACGUugAUCugGG-GGGCGu -3' miRNA: 3'- cUUAGCGG-UGCG--UAGugCCaCCCGUu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 200523 | 0.72 | 0.629556 |
Target: 5'- cGGAUCGCCGCGCAcagggcgucCAUGGcgaGGGCGAc -3' miRNA: 3'- -CUUAGCGGUGCGUa--------GUGCCa--CCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 200780 | 0.67 | 0.882745 |
Target: 5'- --cUCGUCGCGCG--GCGGUggcGGGCGAc -3' miRNA: 3'- cuuAGCGGUGCGUagUGCCA---CCCGUU- -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 203303 | 0.69 | 0.794909 |
Target: 5'- cGAAUCGUCGCGCGaaguaGGUGGGUc- -3' miRNA: 3'- -CUUAGCGGUGCGUagug-CCACCCGuu -5' |
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15889 | 5' | -56.2 | NC_004065.1 | + | 210588 | 0.66 | 0.940466 |
Target: 5'- -cAUCGCCA-GCAgCGCGGUGccuccGGCAc -3' miRNA: 3'- cuUAGCGGUgCGUaGUGCCAC-----CCGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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