miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15889 5' -56.2 NC_004065.1 + 200523 0.72 0.629556
Target:  5'- cGGAUCGCCGCGCAcagggcgucCAUGGcgaGGGCGAc -3'
miRNA:   3'- -CUUAGCGGUGCGUa--------GUGCCa--CCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 182471 0.66 0.944966
Target:  5'- ----gGCCugGgUcgCugGGUGGGCGGu -3'
miRNA:   3'- cuuagCGGugC-GuaGugCCACCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 92528 0.66 0.930773
Target:  5'- --cUCGCgCGCGCGU-ACGGgcGGGCGGg -3'
miRNA:   3'- cuuAGCG-GUGCGUAgUGCCa-CCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 72600 0.66 0.930264
Target:  5'- gGggUCG-UACGUGUUcgcgaucccgaugACGGUGGGCAu -3'
miRNA:   3'- -CuuAGCgGUGCGUAG-------------UGCCACCCGUu -5'
15889 5' -56.2 NC_004065.1 + 142013 0.66 0.925576
Target:  5'- cGGAUCGUCgACGaCGUCgucgucgacgACGGUGGGgGAu -3'
miRNA:   3'- -CUUAGCGG-UGC-GUAG----------UGCCACCCgUU- -5'
15889 5' -56.2 NC_004065.1 + 133999 0.66 0.925576
Target:  5'- ---gUGcCCACGCA-CGCGG-GGGCGGu -3'
miRNA:   3'- cuuaGC-GGUGCGUaGUGCCaCCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 44061 0.66 0.920147
Target:  5'- -cAUCGCCAucuccuucaacCGCAUCACGuacGUGGcGCGc -3'
miRNA:   3'- cuUAGCGGU-----------GCGUAGUGC---CACC-CGUu -5'
15889 5' -56.2 NC_004065.1 + 44429 0.66 0.919591
Target:  5'- aGAUcCGCCAguacaccagcucCGCGUucgucuugaacgaCGCGGUGGGCAc -3'
miRNA:   3'- cUUA-GCGGU------------GCGUA-------------GUGCCACCCGUu -5'
15889 5' -56.2 NC_004065.1 + 45817 0.67 0.889541
Target:  5'- ---aCGCCGCGUG-CG-GGUGGGCAu -3'
miRNA:   3'- cuuaGCGGUGCGUaGUgCCACCCGUu -5'
15889 5' -56.2 NC_004065.1 + 200780 0.67 0.882745
Target:  5'- --cUCGUCGCGCG--GCGGUggcGGGCGAc -3'
miRNA:   3'- cuuAGCGGUGCGUagUGCCA---CCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 62109 0.68 0.868505
Target:  5'- cGGUCGUUACGC-UCGCGGgagGcGGCAu -3'
miRNA:   3'- cUUAGCGGUGCGuAGUGCCa--C-CCGUu -5'
15889 5' -56.2 NC_004065.1 + 66091 0.68 0.853438
Target:  5'- cGAGUCGUuccugCACGCG-CugGG-GGGCGAc -3'
miRNA:   3'- -CUUAGCG-----GUGCGUaGugCCaCCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 30811 0.68 0.853438
Target:  5'- -uGUCGUCAC-CGUCGCGGUGcGCGu -3'
miRNA:   3'- cuUAGCGGUGcGUAGUGCCACcCGUu -5'
15889 5' -56.2 NC_004065.1 + 62691 0.7 0.758141
Target:  5'- ---cCGCCGCGUugGUCGCGGUcuugGGGUAGc -3'
miRNA:   3'- cuuaGCGGUGCG--UAGUGCCA----CCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 120328 0.7 0.748655
Target:  5'- aGggUCGCCGCGCgAUCuCGGc-GGCGAu -3'
miRNA:   3'- -CuuAGCGGUGCG-UAGuGCCacCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 179736 0.71 0.719635
Target:  5'- cGAUCGCCGCGCGgacgGCGGUcucgGGGCc- -3'
miRNA:   3'- cUUAGCGGUGCGUag--UGCCA----CCCGuu -5'
15889 5' -56.2 NC_004065.1 + 104886 0.75 0.498906
Target:  5'- uGAUCGCCACGCGgcugggcgacggCGCGGUGGuGCc- -3'
miRNA:   3'- cUUAGCGGUGCGUa-----------GUGCCACC-CGuu -5'
15889 5' -56.2 NC_004065.1 + 133449 0.78 0.345369
Target:  5'- -cGUCGCCACGCGUCGCGGcucgucGGCGGa -3'
miRNA:   3'- cuUAGCGGUGCGUAGUGCCac----CCGUU- -5'
15889 5' -56.2 NC_004065.1 + 104577 0.88 0.080338
Target:  5'- ---aCGCCGCGCAUCAUGGUGGGUAAc -3'
miRNA:   3'- cuuaGCGGUGCGUAGUGCCACCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 210588 0.66 0.940466
Target:  5'- -cAUCGCCA-GCAgCGCGGUGccuccGGCAc -3'
miRNA:   3'- cuUAGCGGUgCGUaGUGCCAC-----CCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.