miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15889 5' -56.2 NC_004065.1 + 203303 0.69 0.794909
Target:  5'- cGAAUCGUCGCGCGaaguaGGUGGGUc- -3'
miRNA:   3'- -CUUAGCGGUGCGUagug-CCACCCGuu -5'
15889 5' -56.2 NC_004065.1 + 52504 0.66 0.930773
Target:  5'- -uGUUGgCGCGCgGUgGCGGUGGuGCAGa -3'
miRNA:   3'- cuUAGCgGUGCG-UAgUGCCACC-CGUU- -5'
15889 5' -56.2 NC_004065.1 + 210588 0.66 0.940466
Target:  5'- -cAUCGCCA-GCAgCGCGGUGccuccGGCAc -3'
miRNA:   3'- cuUAGCGGUgCGUaGUGCCAC-----CCGUu -5'
15889 5' -56.2 NC_004065.1 + 42416 1.06 0.00581
Target:  5'- gGAAUCGCCACGCAUCACGGUGGGCAAg -3'
miRNA:   3'- -CUUAGCGGUGCGUAGUGCCACCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 104577 0.88 0.080338
Target:  5'- ---aCGCCGCGCAUCAUGGUGGGUAAc -3'
miRNA:   3'- cuuaGCGGUGCGUAGUGCCACCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 133449 0.78 0.345369
Target:  5'- -cGUCGCCACGCGUCGCGGcucgucGGCGGa -3'
miRNA:   3'- cuUAGCGGUGCGUAGUGCCac----CCGUU- -5'
15889 5' -56.2 NC_004065.1 + 104886 0.75 0.498906
Target:  5'- uGAUCGCCACGCGgcugggcgacggCGCGGUGGuGCc- -3'
miRNA:   3'- cUUAGCGGUGCGUa-----------GUGCCACC-CGuu -5'
15889 5' -56.2 NC_004065.1 + 179736 0.71 0.719635
Target:  5'- cGAUCGCCGCGCGgacgGCGGUcucgGGGCc- -3'
miRNA:   3'- cUUAGCGGUGCGUag--UGCCA----CCCGuu -5'
15889 5' -56.2 NC_004065.1 + 120328 0.7 0.748655
Target:  5'- aGggUCGCCGCGCgAUCuCGGc-GGCGAu -3'
miRNA:   3'- -CuuAGCGGUGCG-UAGuGCCacCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 140728 0.66 0.925576
Target:  5'- ---cUGCCGCGCucgGUCAacGUGGGCAAg -3'
miRNA:   3'- cuuaGCGGUGCG---UAGUgcCACCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 8700 0.67 0.889541
Target:  5'- uGGUCGCCaguaGCGCGUUAgGG-GGGCc- -3'
miRNA:   3'- cUUAGCGG----UGCGUAGUgCCaCCCGuu -5'
15889 5' -56.2 NC_004065.1 + 66639 0.67 0.889541
Target:  5'- -cAUCGUCG-GCuucggCGCGGUGGGCGc -3'
miRNA:   3'- cuUAGCGGUgCGua---GUGCCACCCGUu -5'
15889 5' -56.2 NC_004065.1 + 111940 0.69 0.803764
Target:  5'- ---gCGCCGC-CGUCGCGGUGGaCGAu -3'
miRNA:   3'- cuuaGCGGUGcGUAGUGCCACCcGUU- -5'
15889 5' -56.2 NC_004065.1 + 81139 0.67 0.913906
Target:  5'- aGAUCGUgA-GCAUCACGGUGucggacaGGCAGa -3'
miRNA:   3'- cUUAGCGgUgCGUAGUGCCAC-------CCGUU- -5'
15889 5' -56.2 NC_004065.1 + 110844 0.69 0.829388
Target:  5'- aGAcUCGCuCACGgcCAUCcugGCGGUGGGUAAc -3'
miRNA:   3'- -CUuAGCG-GUGC--GUAG---UGCCACCCGUU- -5'
15889 5' -56.2 NC_004065.1 + 97925 0.67 0.88549
Target:  5'- cGAAcCGCCGCGCGUcCggcaccggcguggcaGCGGUGGGgAc -3'
miRNA:   3'- -CUUaGCGGUGCGUA-G---------------UGCCACCCgUu -5'
15889 5' -56.2 NC_004065.1 + 114499 0.66 0.925576
Target:  5'- ---cCGCC-CGCAUCACGGUGa-CAGa -3'
miRNA:   3'- cuuaGCGGuGCGUAGUGCCACccGUU- -5'
15889 5' -56.2 NC_004065.1 + 185196 0.66 0.935736
Target:  5'- -uGUCGCUgucCGUGUCGCGGUGguGGCGc -3'
miRNA:   3'- cuUAGCGGu--GCGUAGUGCCAC--CCGUu -5'
15889 5' -56.2 NC_004065.1 + 26049 0.68 0.861073
Target:  5'- uAGUCGCCAUGUucGUCGCGGUaacGGCc- -3'
miRNA:   3'- cUUAGCGGUGCG--UAGUGCCAc--CCGuu -5'
15889 5' -56.2 NC_004065.1 + 171637 0.68 0.868505
Target:  5'- aGAA-C-CUGCGCAUCACGGUGaGGCc- -3'
miRNA:   3'- -CUUaGcGGUGCGUAGUGCCAC-CCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.