miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15890 3' -58.6 NC_004065.1 + 168641 0.66 0.932604
Target:  5'- cGGGcGGAgcCGgcGCGGCGACGUCgUCUCg -3'
miRNA:   3'- cCCCaCCU--GC--UGCUGCUGUAGgGGGG- -5'
15890 3' -58.6 NC_004065.1 + 227878 0.66 0.932604
Target:  5'- cGGGGgGaGACGGCgGACGAgGaUCgCUCCg -3'
miRNA:   3'- -CCCCaC-CUGCUG-CUGCUgU-AGgGGGG- -5'
15890 3' -58.6 NC_004065.1 + 210716 0.66 0.932603
Target:  5'- cGGGUaGGAUGACgcccgucgccgGACGGuCcagAUCCCCCg -3'
miRNA:   3'- cCCCA-CCUGCUG-----------CUGCU-G---UAGGGGGg -5'
15890 3' -58.6 NC_004065.1 + 131479 0.66 0.932603
Target:  5'- ----aGGACGAUgccgcgacgGGCGGCGUCUCCCg -3'
miRNA:   3'- ccccaCCUGCUG---------CUGCUGUAGGGGGg -5'
15890 3' -58.6 NC_004065.1 + 114606 0.66 0.93213
Target:  5'- aGGGcUGGuaucgcccucgcuACGACcccgccgggGACGAuCAUCCCUCCu -3'
miRNA:   3'- cCCC-ACC-------------UGCUG---------CUGCU-GUAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 45603 0.66 0.931177
Target:  5'- gGGGGgcgcgGGACGAgGggaacggucgagacACGGCGUCCgcgacaccgucUCCCu -3'
miRNA:   3'- -CCCCa----CCUGCUgC--------------UGCUGUAGG-----------GGGG- -5'
15890 3' -58.6 NC_004065.1 + 118653 0.66 0.927776
Target:  5'- cGGcGUcGGACGACGACGccuCGUCCUg-- -3'
miRNA:   3'- cCC-CA-CCUGCUGCUGCu--GUAGGGggg -5'
15890 3' -58.6 NC_004065.1 + 56638 0.66 0.927776
Target:  5'- -cGGUGGcaGCGGCcGCGGCA-CCCUUCa -3'
miRNA:   3'- ccCCACC--UGCUGcUGCUGUaGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 153085 0.66 0.927776
Target:  5'- -aGGaGGAgGACGGCGuCuggCCCUCCg -3'
miRNA:   3'- ccCCaCCUgCUGCUGCuGua-GGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 66497 0.66 0.927776
Target:  5'- ---uUGGACGagucuuuaucGCGGCGACGUUCUUCCg -3'
miRNA:   3'- ccccACCUGC----------UGCUGCUGUAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 130076 0.66 0.927282
Target:  5'- cGGcGGUGGucgacuACGGCGAugccguuCGGCG-CCCgCCCu -3'
miRNA:   3'- -CC-CCACC------UGCUGCU-------GCUGUaGGG-GGG- -5'
15890 3' -58.6 NC_004065.1 + 45539 0.66 0.922741
Target:  5'- cGGcGccGcGGCGGCGGCGGCAgCCgCCCa -3'
miRNA:   3'- cCC-Ca-C-CUGCUGCUGCUGUaGGgGGG- -5'
15890 3' -58.6 NC_004065.1 + 202614 0.66 0.922741
Target:  5'- uGGGUGcGAUGAggaguCGACGACgAUgCCgCCg -3'
miRNA:   3'- cCCCAC-CUGCU-----GCUGCUG-UAgGGgGG- -5'
15890 3' -58.6 NC_004065.1 + 105109 0.66 0.922741
Target:  5'- --cGUGGugGcCGACGACGUgCCgCUg -3'
miRNA:   3'- cccCACCugCuGCUGCUGUAgGGgGG- -5'
15890 3' -58.6 NC_004065.1 + 139483 0.66 0.917497
Target:  5'- aGGGGgccgucGGGCGG-GACGAgaaGUaCUCCCCg -3'
miRNA:   3'- -CCCCa-----CCUGCUgCUGCUg--UA-GGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 116114 0.66 0.917497
Target:  5'- aGGGGUGGuCGcCGGagguagcugguCGGCGUCCUgCg -3'
miRNA:   3'- -CCCCACCuGCuGCU-----------GCUGUAGGGgGg -5'
15890 3' -58.6 NC_004065.1 + 17168 0.66 0.917497
Target:  5'- ----aGGu--ACGACGGCAUCCCCCa -3'
miRNA:   3'- ccccaCCugcUGCUGCUGUAGGGGGg -5'
15890 3' -58.6 NC_004065.1 + 105767 0.66 0.912045
Target:  5'- -cGGUGcGACGGCGGCuucccGCGUCgCCCa -3'
miRNA:   3'- ccCCAC-CUGCUGCUGc----UGUAGgGGGg -5'
15890 3' -58.6 NC_004065.1 + 94633 0.66 0.912045
Target:  5'- cGGGGUcGGGCGcggcCGGCG-CGUCaCCguCCCu -3'
miRNA:   3'- -CCCCA-CCUGCu---GCUGCuGUAG-GG--GGG- -5'
15890 3' -58.6 NC_004065.1 + 31131 0.66 0.906386
Target:  5'- aGGcUGGACGG-GAagGugAUCCCCCUg -3'
miRNA:   3'- cCCcACCUGCUgCUg-CugUAGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.