miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15890 3' -58.6 NC_004065.1 + 40233 1.14 0.001639
Target:  5'- cGGGGUGGACGACGACGACAUCCCCCCg -3'
miRNA:   3'- -CCCCACCUGCUGCUGCUGUAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 67669 0.8 0.268123
Target:  5'- cGGGGaGcGGCGGCGGCGGCGgcgggCCCUCCa -3'
miRNA:   3'- -CCCCaC-CUGCUGCUGCUGUa----GGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 112036 0.79 0.299138
Target:  5'- ----aGGACGACGACGACAagaUCCCCaCCg -3'
miRNA:   3'- ccccaCCUGCUGCUGCUGU---AGGGG-GG- -5'
15890 3' -58.6 NC_004065.1 + 47771 0.78 0.319044
Target:  5'- aGGGGUGGcCGACGAgGAg--CCCCUCg -3'
miRNA:   3'- -CCCCACCuGCUGCUgCUguaGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 19034 0.75 0.449897
Target:  5'- aGGGuUGGACGACGGCGGCGguggCCCacaUCu -3'
miRNA:   3'- cCCC-ACCUGCUGCUGCUGUa---GGGg--GG- -5'
15890 3' -58.6 NC_004065.1 + 131872 0.75 0.458484
Target:  5'- cGGcGGUGG-CGGCGGCGACuAUCaCCgCCa -3'
miRNA:   3'- -CC-CCACCuGCUGCUGCUG-UAG-GGgGG- -5'
15890 3' -58.6 NC_004065.1 + 141440 0.75 0.493667
Target:  5'- aGGGccGcGACGAgGGCGACAUCCCCg- -3'
miRNA:   3'- cCCCa-C-CUGCUgCUGCUGUAGGGGgg -5'
15890 3' -58.6 NC_004065.1 + 22306 0.75 0.493667
Target:  5'- uGGGGUGGACGGUGACGuugACGaCCCCg- -3'
miRNA:   3'- -CCCCACCUGCUGCUGC---UGUaGGGGgg -5'
15890 3' -58.6 NC_004065.1 + 130759 0.75 0.493667
Target:  5'- aGGaGGaGGACGACGACGACGUCgagaaCCUg -3'
miRNA:   3'- -CC-CCaCCUGCUGCUGCUGUAGg----GGGg -5'
15890 3' -58.6 NC_004065.1 + 35635 0.74 0.511717
Target:  5'- cGGcGG-GGAUGucauCGGCGACAgggUCCCCCUg -3'
miRNA:   3'- -CC-CCaCCUGCu---GCUGCUGU---AGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 189789 0.74 0.539283
Target:  5'- cGGGG-GGAUGuCGuCGuCGUCCaCCCCg -3'
miRNA:   3'- -CCCCaCCUGCuGCuGCuGUAGG-GGGG- -5'
15890 3' -58.6 NC_004065.1 + 18982 0.73 0.555128
Target:  5'- cGGGUGGACaucugucaagaccuGACGGCGACGUUCaUCUCg -3'
miRNA:   3'- cCCCACCUG--------------CUGCUGCUGUAGG-GGGG- -5'
15890 3' -58.6 NC_004065.1 + 141939 0.73 0.557938
Target:  5'- cGGGUcGGcgaaauccagauAUGGCGACGACgGUCCUCCCu -3'
miRNA:   3'- cCCCA-CC------------UGCUGCUGCUG-UAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 131154 0.73 0.567336
Target:  5'- --cGUGGGCGACGACGA---CCCCCg -3'
miRNA:   3'- cccCACCUGCUGCUGCUguaGGGGGg -5'
15890 3' -58.6 NC_004065.1 + 111965 0.73 0.571106
Target:  5'- cGGGGUGGAgGACGAagacguguaCGACGagcagggccgccugaUCCUCCg -3'
miRNA:   3'- -CCCCACCUgCUGCU---------GCUGU---------------AGGGGGg -5'
15890 3' -58.6 NC_004065.1 + 194383 0.73 0.586244
Target:  5'- aGGG-GGAcccuguCGcCGAUGACAUCCCCgCCg -3'
miRNA:   3'- cCCCaCCU------GCuGCUGCUGUAGGGG-GG- -5'
15890 3' -58.6 NC_004065.1 + 99867 0.73 0.586244
Target:  5'- cGGGGUcgcGGAUaGCGACGGCcucGUCCUUCCu -3'
miRNA:   3'- -CCCCA---CCUGcUGCUGCUG---UAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 57805 0.72 0.624361
Target:  5'- cGGGaGGACccgacgggGACGACGagaucaGCGUCCCUCCg -3'
miRNA:   3'- cCCCaCCUG--------CUGCUGC------UGUAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 181124 0.72 0.632007
Target:  5'- cGGGGUGGcgGCGGCGgggagagaaaacguaGgguaacaaccgcgcaCGACGUCCUCCCu -3'
miRNA:   3'- -CCCCACC--UGCUGC---------------U---------------GCUGUAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 48022 0.72 0.653024
Target:  5'- cGGGGUcccuGACGACGuacuGCGGguccuCAUCCCCCa -3'
miRNA:   3'- -CCCCAc---CUGCUGC----UGCU-----GUAGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.