miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15890 3' -58.6 NC_004065.1 + 31131 0.66 0.906386
Target:  5'- aGGcUGGACGG-GAagGugAUCCCCCUg -3'
miRNA:   3'- cCCcACCUGCUgCUg-CugUAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 195592 0.66 0.906386
Target:  5'- cGGGU-GACGGCuggGAUGACcgcuuuUCCCCUCu -3'
miRNA:   3'- cCCCAcCUGCUG---CUGCUGu-----AGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 81910 0.66 0.906386
Target:  5'- cGGcGUGGACGucguagGCGugGugcacCAUCUCUCCg -3'
miRNA:   3'- cCC-CACCUGC------UGCugCu----GUAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 182349 0.67 0.902893
Target:  5'- -cGGUGGACGACGauuccgacgacgacuGCGACA-CCagCCUg -3'
miRNA:   3'- ccCCACCUGCUGC---------------UGCUGUaGGg-GGG- -5'
15890 3' -58.6 NC_004065.1 + 153593 0.67 0.902893
Target:  5'- cGGGUGGugGACccCGACcgCCUaguucucaauacuaaCCCc -3'
miRNA:   3'- cCCCACCugCUGcuGCUGuaGGG---------------GGG- -5'
15890 3' -58.6 NC_004065.1 + 198361 0.67 0.900524
Target:  5'- cGGGGUccuucgccaGGAacaGCGcCGACGUCCCguagCCCg -3'
miRNA:   3'- -CCCCA---------CCUgc-UGCuGCUGUAGGG----GGG- -5'
15890 3' -58.6 NC_004065.1 + 56121 0.67 0.900524
Target:  5'- ----cGGACGACGGCGGCG-CUCgCCu -3'
miRNA:   3'- ccccaCCUGCUGCUGCUGUaGGGgGG- -5'
15890 3' -58.6 NC_004065.1 + 80317 0.67 0.900524
Target:  5'- aGGGccGGCG-CGGCcGCggCCCCCCg -3'
miRNA:   3'- cCCCacCUGCuGCUGcUGuaGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 175367 0.67 0.900524
Target:  5'- -uGGUGGucacgaaucuGCGGCagcaggcgGACGACgAUCCCCCa -3'
miRNA:   3'- ccCCACC----------UGCUG--------CUGCUG-UAGGGGGg -5'
15890 3' -58.6 NC_004065.1 + 31005 0.67 0.894458
Target:  5'- cGGGGUGGcgagauggagagGCcgguGACGGCGAacgcCAUCUCCgCg -3'
miRNA:   3'- -CCCCACC------------UG----CUGCUGCU----GUAGGGGgG- -5'
15890 3' -58.6 NC_004065.1 + 154152 0.67 0.884338
Target:  5'- gGGcGGUGGcgGCGGCGGCGGCGgcggcuguugcuggCUCgCCg -3'
miRNA:   3'- -CC-CCACC--UGCUGCUGCUGUa-------------GGGgGG- -5'
15890 3' -58.6 NC_004065.1 + 127136 0.67 0.881729
Target:  5'- cGGcGGcGGcgcuaccgGCGGCGGCGAUcgCCCUCUc -3'
miRNA:   3'- -CC-CCaCC--------UGCUGCUGCUGuaGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 79322 0.67 0.881729
Target:  5'- -aGGUGGACGAgcuCGAgAUCCCCa- -3'
miRNA:   3'- ccCCACCUGCUgcuGCUgUAGGGGgg -5'
15890 3' -58.6 NC_004065.1 + 101851 0.67 0.877759
Target:  5'- cGGGGgcgucggGGGCgcuaucgccgccgcaGACGACGACGccggggcggcUCCUCCg -3'
miRNA:   3'- -CCCCa------CCUG---------------CUGCUGCUGU----------AGGGGGg -5'
15890 3' -58.6 NC_004065.1 + 96703 0.67 0.875073
Target:  5'- aGGGGacgaaGACGGCGAuuuCGACGgUCUCCUCu -3'
miRNA:   3'- -CCCCac---CUGCUGCU---GCUGU-AGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 138234 0.67 0.875073
Target:  5'- cGGGGaGGucgccAUGGCgGACGACgAUCUCUCCa -3'
miRNA:   3'- -CCCCaCC-----UGCUG-CUGCUG-UAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 211525 0.67 0.875073
Target:  5'- aGGGUcgucGGugG-CGACGACG-CCCCg- -3'
miRNA:   3'- cCCCA----CCugCuGCUGCUGUaGGGGgg -5'
15890 3' -58.6 NC_004065.1 + 186753 0.67 0.871674
Target:  5'- cGGGUcGACGACGACGACuuggagaagcugcgcGggcgcuugaugaaagCUCCCCg -3'
miRNA:   3'- cCCCAcCUGCUGCUGCUG---------------Ua--------------GGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 82545 0.67 0.870988
Target:  5'- aGGGGcUGGACGGCcaccaugcggccgcaGACGugGaUCCCgCa -3'
miRNA:   3'- -CCCC-ACCUGCUG---------------CUGCugU-AGGGgGg -5'
15890 3' -58.6 NC_004065.1 + 173968 0.67 0.868228
Target:  5'- cGGGGUGGuCcACGACcuggGGCGcgaaCCCUCCg -3'
miRNA:   3'- -CCCCACCuGcUGCUG----CUGUa---GGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.