miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15890 3' -58.6 NC_004065.1 + 1317 0.68 0.861197
Target:  5'- aGGGcgaaUGGACGAUcgaGugGuACAUCCCCagCCu -3'
miRNA:   3'- cCCC----ACCUGCUG---CugC-UGUAGGGG--GG- -5'
15890 3' -58.6 NC_004065.1 + 4283 0.69 0.79893
Target:  5'- gGGGGUaGccACGACGGCGugucguucuCAUCCUCCUu -3'
miRNA:   3'- -CCCCAcC--UGCUGCUGCu--------GUAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 17168 0.66 0.917497
Target:  5'- ----aGGu--ACGACGGCAUCCCCCa -3'
miRNA:   3'- ccccaCCugcUGCUGCUGUAGGGGGg -5'
15890 3' -58.6 NC_004065.1 + 18982 0.73 0.555128
Target:  5'- cGGGUGGACaucugucaagaccuGACGGCGACGUUCaUCUCg -3'
miRNA:   3'- cCCCACCUG--------------CUGCUGCUGUAGG-GGGG- -5'
15890 3' -58.6 NC_004065.1 + 19034 0.75 0.449897
Target:  5'- aGGGuUGGACGACGGCGGCGguggCCCacaUCu -3'
miRNA:   3'- cCCC-ACCUGCUGCUGCUGUa---GGGg--GG- -5'
15890 3' -58.6 NC_004065.1 + 19293 0.7 0.755534
Target:  5'- gGGGGaucUGGAccgucCGGCGACGGgcguCAUCCUaCCCg -3'
miRNA:   3'- -CCCC---ACCU-----GCUGCUGCU----GUAGGG-GGG- -5'
15890 3' -58.6 NC_004065.1 + 22306 0.75 0.493667
Target:  5'- uGGGGUGGACGGUGACGuugACGaCCCCg- -3'
miRNA:   3'- -CCCCACCUGCUGCUGC---UGUaGGGGgg -5'
15890 3' -58.6 NC_004065.1 + 24530 0.72 0.662558
Target:  5'- uGGcGGcGGcaGCGACGACGGCAgcggagacgagCCCCUCg -3'
miRNA:   3'- -CC-CCaCC--UGCUGCUGCUGUa----------GGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 26296 0.7 0.719065
Target:  5'- cGGaUGauGACGACGACGAUGUgaugaucauggaCCCCCCg -3'
miRNA:   3'- cCCcAC--CUGCUGCUGCUGUA------------GGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 31005 0.67 0.894458
Target:  5'- cGGGGUGGcgagauggagagGCcgguGACGGCGAacgcCAUCUCCgCg -3'
miRNA:   3'- -CCCCACC------------UG----CUGCUGCU----GUAGGGGgG- -5'
15890 3' -58.6 NC_004065.1 + 31131 0.66 0.906386
Target:  5'- aGGcUGGACGG-GAagGugAUCCCCCUg -3'
miRNA:   3'- cCCcACCUGCUgCUg-CugUAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 33299 0.72 0.662558
Target:  5'- uGGGGUaGGCGGCGACGcgaACGuaauUCUCCUCg -3'
miRNA:   3'- -CCCCAcCUGCUGCUGC---UGU----AGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 33833 0.68 0.846601
Target:  5'- aGGGGUuGGCGAagggGACGAacucgAUCUCCCUg -3'
miRNA:   3'- -CCCCAcCUGCUg---CUGCUg----UAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 34339 0.68 0.853987
Target:  5'- cGGcGUGGACGA-GAgGAgCcUUCCCCCg -3'
miRNA:   3'- cCC-CACCUGCUgCUgCU-GuAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 35635 0.74 0.511717
Target:  5'- cGGcGG-GGAUGucauCGGCGACAgggUCCCCCUg -3'
miRNA:   3'- -CC-CCaCCUGCu---GCUGCUGU---AGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 40233 1.14 0.001639
Target:  5'- cGGGGUGGACGACGACGACAUCCCCCCg -3'
miRNA:   3'- -CCCCACCUGCUGCUGCUGUAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 42648 0.7 0.746541
Target:  5'- -cGGUGGAC--CGugGA--UCCCCCCg -3'
miRNA:   3'- ccCCACCUGcuGCugCUguAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 44537 0.69 0.781916
Target:  5'- -cGG-GGACGGUGGCGGCGcugCCUCCCg -3'
miRNA:   3'- ccCCaCCUGCUGCUGCUGUa--GGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 45539 0.66 0.922741
Target:  5'- cGGcGccGcGGCGGCGGCGGCAgCCgCCCa -3'
miRNA:   3'- cCC-Ca-C-CUGCUGCUGCUGUaGGgGGG- -5'
15890 3' -58.6 NC_004065.1 + 45603 0.66 0.931177
Target:  5'- gGGGGgcgcgGGACGAgGggaacggucgagacACGGCGUCCgcgacaccgucUCCCu -3'
miRNA:   3'- -CCCCa----CCUGCUgC--------------UGCUGUAGG-----------GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.