miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15890 3' -58.6 NC_004065.1 + 76527 0.69 0.779322
Target:  5'- ----aGGACGGCGGCGuguucgcaccugucGCA-CCCCCCg -3'
miRNA:   3'- ccccaCCUGCUGCUGC--------------UGUaGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 72212 0.71 0.70041
Target:  5'- --aGUGGACGcAgGAgGACAUCCgCCCg -3'
miRNA:   3'- cccCACCUGC-UgCUgCUGUAGGgGGG- -5'
15890 3' -58.6 NC_004065.1 + 135558 0.71 0.70041
Target:  5'- cGGGcGGACGACGgggagGCGGcCGUCaCCUCCu -3'
miRNA:   3'- cCCCaCCUGCUGC-----UGCU-GUAG-GGGGG- -5'
15890 3' -58.6 NC_004065.1 + 26296 0.7 0.719065
Target:  5'- cGGaUGauGACGACGACGAUGUgaugaucauggaCCCCCCg -3'
miRNA:   3'- cCCcAC--CUGCUGCUGCUGUA------------GGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 113950 0.7 0.719065
Target:  5'- cGGGGgcugGGACGGaGACGcCgAUCCCUUCg -3'
miRNA:   3'- -CCCCa---CCUGCUgCUGCuG-UAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 152321 0.7 0.728298
Target:  5'- cGGcGG-GGACGAUGACGGCuUCgaCCUCg -3'
miRNA:   3'- -CC-CCaCCUGCUGCUGCUGuAGg-GGGG- -5'
15890 3' -58.6 NC_004065.1 + 19293 0.7 0.755534
Target:  5'- gGGGGaucUGGAccgucCGGCGACGGgcguCAUCCUaCCCg -3'
miRNA:   3'- -CCCC---ACCU-----GCUGCUGCU----GUAGGG-GGG- -5'
15890 3' -58.6 NC_004065.1 + 146756 0.7 0.755534
Target:  5'- --uGUGGGCGuCGGCGGCGUCUgCCg -3'
miRNA:   3'- cccCACCUGCuGCUGCUGUAGGgGGg -5'
15890 3' -58.6 NC_004065.1 + 109668 0.7 0.764433
Target:  5'- aGGGUccuccGGGCGcucucCGACGACAUCgCCgCCg -3'
miRNA:   3'- cCCCA-----CCUGCu----GCUGCUGUAGgGG-GG- -5'
15890 3' -58.6 NC_004065.1 + 120885 0.71 0.699472
Target:  5'- cGGGGUcaGGGCGgcgucucGCGGCGACAgcaCCCgCa -3'
miRNA:   3'- -CCCCA--CCUGC-------UGCUGCUGUag-GGGgG- -5'
15890 3' -58.6 NC_004065.1 + 138557 0.71 0.691004
Target:  5'- cGGcGGcGGACuGACGGCGACGgugCCgUCCg -3'
miRNA:   3'- -CC-CCaCCUG-CUGCUGCUGUa--GGgGGG- -5'
15890 3' -58.6 NC_004065.1 + 33299 0.72 0.662558
Target:  5'- uGGGGUaGGCGGCGACGcgaACGuaauUCUCCUCg -3'
miRNA:   3'- -CCCCAcCUGCUGCUGC---UGU----AGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 112036 0.79 0.299138
Target:  5'- ----aGGACGACGACGACAagaUCCCCaCCg -3'
miRNA:   3'- ccccaCCUGCUGCUGCUGU---AGGGG-GG- -5'
15890 3' -58.6 NC_004065.1 + 47771 0.78 0.319044
Target:  5'- aGGGGUGGcCGACGAgGAg--CCCCUCg -3'
miRNA:   3'- -CCCCACCuGCUGCUgCUguaGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 19034 0.75 0.449897
Target:  5'- aGGGuUGGACGACGGCGGCGguggCCCacaUCu -3'
miRNA:   3'- cCCC-ACCUGCUGCUGCUGUa---GGGg--GG- -5'
15890 3' -58.6 NC_004065.1 + 35635 0.74 0.511717
Target:  5'- cGGcGG-GGAUGucauCGGCGACAgggUCCCCCUg -3'
miRNA:   3'- -CC-CCaCCUGCu---GCUGCUGU---AGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 189789 0.74 0.539283
Target:  5'- cGGGG-GGAUGuCGuCGuCGUCCaCCCCg -3'
miRNA:   3'- -CCCCaCCUGCuGCuGCuGUAGG-GGGG- -5'
15890 3' -58.6 NC_004065.1 + 141939 0.73 0.557938
Target:  5'- cGGGUcGGcgaaauccagauAUGGCGACGACgGUCCUCCCu -3'
miRNA:   3'- cCCCA-CC------------UGCUGCUGCUG-UAGGGGGG- -5'
15890 3' -58.6 NC_004065.1 + 48022 0.72 0.653024
Target:  5'- cGGGGUcccuGACGACGuacuGCGGguccuCAUCCCCCa -3'
miRNA:   3'- -CCCCAc---CUGCUGC----UGCU-----GUAGGGGGg -5'
15890 3' -58.6 NC_004065.1 + 24530 0.72 0.662558
Target:  5'- uGGcGGcGGcaGCGACGACGGCAgcggagacgagCCCCUCg -3'
miRNA:   3'- -CC-CCaCC--UGCUGCUGCUGUa----------GGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.