Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15890 | 5' | -54 | NC_004065.1 | + | 137570 | 0.66 | 0.983701 |
Target: 5'- gGU-CGAAGGCGUGcGUCagGUACUCCg -3' miRNA: 3'- -CAuGCUUCUGUACuCGGg-CGUGAGGa -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 99771 | 0.66 | 0.983701 |
Target: 5'- gGUGCGAGauGGCGuUGAGUuuGCACaCCa -3' miRNA: 3'- -CAUGCUU--CUGU-ACUCGggCGUGaGGa -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 171812 | 0.66 | 0.983701 |
Target: 5'- -cGCGgcGACGUGGGCuuugaCCGCAUgCCc -3' miRNA: 3'- caUGCuuCUGUACUCG-----GGCGUGaGGa -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 110322 | 0.66 | 0.981766 |
Target: 5'- -aGCucuGGCcgGGGCUCGUGCUCCUc -3' miRNA: 3'- caUGcuuCUGuaCUCGGGCGUGAGGA- -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 129256 | 0.66 | 0.981766 |
Target: 5'- -cGCGAAG-C-UGAGCCCGC-C-CCa -3' miRNA: 3'- caUGCUUCuGuACUCGGGCGuGaGGa -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 137807 | 0.66 | 0.981766 |
Target: 5'- uGUGuCGggGAUGUGGGCCUGUucGCggcCCg -3' miRNA: 3'- -CAU-GCuuCUGUACUCGGGCG--UGa--GGa -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 133983 | 0.66 | 0.979662 |
Target: 5'- --uCGgcGGCcgGGGCCCGUGC-CCa -3' miRNA: 3'- cauGCuuCUGuaCUCGGGCGUGaGGa -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 69180 | 0.66 | 0.979662 |
Target: 5'- -gGCGAAGGCGacgGAGUUCGCACa--- -3' miRNA: 3'- caUGCUUCUGUa--CUCGGGCGUGagga -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 140671 | 0.66 | 0.979662 |
Target: 5'- --uCGAGGACAUccgacAGCCCGUGCUgCUc -3' miRNA: 3'- cauGCUUCUGUAc----UCGGGCGUGAgGA- -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 120685 | 0.66 | 0.978317 |
Target: 5'- -gACGAAGuACAUGucucccagcggcucGCCCGCuuucaGCUCCg -3' miRNA: 3'- caUGCUUC-UGUACu-------------CGGGCG-----UGAGGa -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 203641 | 0.66 | 0.974924 |
Target: 5'- -gGCGggGGCAUGGGgaacgcCCCGUAUcCCc -3' miRNA: 3'- caUGCuuCUGUACUC------GGGCGUGaGGa -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 71988 | 0.66 | 0.974924 |
Target: 5'- -gGCGAcgcaugcccuGGAgGUGAGCCUGCuggACUUCUc -3' miRNA: 3'- caUGCU----------UCUgUACUCGGGCG---UGAGGA- -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 67208 | 0.67 | 0.955959 |
Target: 5'- aUGCGAAGAUcgcagaagaaAUGAGCCUaggaucCGCUCCg -3' miRNA: 3'- cAUGCUUCUG----------UACUCGGGc-----GUGAGGa -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 3827 | 0.67 | 0.955959 |
Target: 5'- --cCGAGGucucCGUgGAGCCCGCGC-CCUc -3' miRNA: 3'- cauGCUUCu---GUA-CUCGGGCGUGaGGA- -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 176556 | 0.68 | 0.952046 |
Target: 5'- -aACGGAGGCugGUGAGCCauCAUUCCc -3' miRNA: 3'- caUGCUUCUG--UACUCGGgcGUGAGGa -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 115424 | 0.68 | 0.951642 |
Target: 5'- -aGCGAGGGCGauaccAGCCCucguaggGCACUCCg -3' miRNA: 3'- caUGCUUCUGUac---UCGGG-------CGUGAGGa -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 60562 | 0.68 | 0.943538 |
Target: 5'- -gACGGAGACGccGGGUCCGCACa--- -3' miRNA: 3'- caUGCUUCUGUa-CUCGGGCGUGagga -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 81054 | 0.68 | 0.938936 |
Target: 5'- -gACGGGaACGUGGuggaaCCCGCACUCCg -3' miRNA: 3'- caUGCUUcUGUACUc----GGGCGUGAGGa -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 198905 | 0.68 | 0.938463 |
Target: 5'- -gACGGAGACgGUGAcggugguGCCUGCccGCUCCa -3' miRNA: 3'- caUGCUUCUG-UACU-------CGGGCG--UGAGGa -5' |
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15890 | 5' | -54 | NC_004065.1 | + | 61718 | 0.69 | 0.92903 |
Target: 5'- -aGCGGcGGAUgcGAGCCaUGCGCUCCUu -3' miRNA: 3'- caUGCU-UCUGuaCUCGG-GCGUGAGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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