miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15890 5' -54 NC_004065.1 + 40283 1.07 0.008633
Target:  5'- gGUACGAAGACAUGAGCCCGCACUCCUu -3'
miRNA:   3'- -CAUGCUUCUGUACUCGGGCGUGAGGA- -5'
15890 5' -54 NC_004065.1 + 193775 0.73 0.734386
Target:  5'- -gAUGgcGACuUGAGCUCGCGCUCUg -3'
miRNA:   3'- caUGCuuCUGuACUCGGGCGUGAGGa -5'
15890 5' -54 NC_004065.1 + 106167 0.72 0.798955
Target:  5'- cGUGCGGAgcGACAUGGGCUCGCGgaugcaggaccugUUCCa -3'
miRNA:   3'- -CAUGCUU--CUGUACUCGGGCGU-------------GAGGa -5'
15890 5' -54 NC_004065.1 + 196945 0.72 0.817331
Target:  5'- -gACGAAGACccGGGUCCaCGCUCCc -3'
miRNA:   3'- caUGCUUCUGuaCUCGGGcGUGAGGa -5'
15890 5' -54 NC_004065.1 + 209088 0.7 0.87292
Target:  5'- gGU-CGAGGACcaGUGcGCCCGC-CUCCa -3'
miRNA:   3'- -CAuGCUUCUG--UACuCGGGCGuGAGGa -5'
15890 5' -54 NC_004065.1 + 181359 0.7 0.880058
Target:  5'- uGUugGc-GACAUGAGCUgGCAC-CCUg -3'
miRNA:   3'- -CAugCuuCUGUACUCGGgCGUGaGGA- -5'
15890 5' -54 NC_004065.1 + 168854 0.7 0.893676
Target:  5'- -cACGGAGuuuUGAGCUCGCcCUCCa -3'
miRNA:   3'- caUGCUUCuguACUCGGGCGuGAGGa -5'
15890 5' -54 NC_004065.1 + 146416 0.7 0.893676
Target:  5'- cUGCGcuc-CggGGGCCCGCGCUCCg -3'
miRNA:   3'- cAUGCuucuGuaCUCGGGCGUGAGGa -5'
15890 5' -54 NC_004065.1 + 183799 0.69 0.91818
Target:  5'- -cGCGGuAGAUccuucgGAGCCCGgACUCCg -3'
miRNA:   3'- caUGCU-UCUGua----CUCGGGCgUGAGGa -5'
15890 5' -54 NC_004065.1 + 61718 0.69 0.92903
Target:  5'- -aGCGGcGGAUgcGAGCCaUGCGCUCCUu -3'
miRNA:   3'- caUGCU-UCUGuaCUCGG-GCGUGAGGA- -5'
15890 5' -54 NC_004065.1 + 198905 0.68 0.938463
Target:  5'- -gACGGAGACgGUGAcggugguGCCUGCccGCUCCa -3'
miRNA:   3'- caUGCUUCUG-UACU-------CGGGCG--UGAGGa -5'
15890 5' -54 NC_004065.1 + 81054 0.68 0.938936
Target:  5'- -gACGGGaACGUGGuggaaCCCGCACUCCg -3'
miRNA:   3'- caUGCUUcUGUACUc----GGGCGUGAGGa -5'
15890 5' -54 NC_004065.1 + 60562 0.68 0.943538
Target:  5'- -gACGGAGACGccGGGUCCGCACa--- -3'
miRNA:   3'- caUGCUUCUGUa-CUCGGGCGUGagga -5'
15890 5' -54 NC_004065.1 + 115424 0.68 0.951642
Target:  5'- -aGCGAGGGCGauaccAGCCCucguaggGCACUCCg -3'
miRNA:   3'- caUGCUUCUGUac---UCGGG-------CGUGAGGa -5'
15890 5' -54 NC_004065.1 + 176556 0.68 0.952046
Target:  5'- -aACGGAGGCugGUGAGCCauCAUUCCc -3'
miRNA:   3'- caUGCUUCUG--UACUCGGgcGUGAGGa -5'
15890 5' -54 NC_004065.1 + 67208 0.67 0.955959
Target:  5'- aUGCGAAGAUcgcagaagaaAUGAGCCUaggaucCGCUCCg -3'
miRNA:   3'- cAUGCUUCUG----------UACUCGGGc-----GUGAGGa -5'
15890 5' -54 NC_004065.1 + 3827 0.67 0.955959
Target:  5'- --cCGAGGucucCGUgGAGCCCGCGC-CCUc -3'
miRNA:   3'- cauGCUUCu---GUA-CUCGGGCGUGaGGA- -5'
15890 5' -54 NC_004065.1 + 71988 0.66 0.974924
Target:  5'- -gGCGAcgcaugcccuGGAgGUGAGCCUGCuggACUUCUc -3'
miRNA:   3'- caUGCU----------UCUgUACUCGGGCG---UGAGGA- -5'
15890 5' -54 NC_004065.1 + 203641 0.66 0.974924
Target:  5'- -gGCGggGGCAUGGGgaacgcCCCGUAUcCCc -3'
miRNA:   3'- caUGCuuCUGUACUC------GGGCGUGaGGa -5'
15890 5' -54 NC_004065.1 + 120685 0.66 0.978317
Target:  5'- -gACGAAGuACAUGucucccagcggcucGCCCGCuuucaGCUCCg -3'
miRNA:   3'- caUGCUUC-UGUACu-------------CGGGCG-----UGAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.