miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15894 3' -53.3 NC_004065.1 + 195296 0.66 0.990602
Target:  5'- -gGUGgaAGCUCuugAAGUCGCgCAUCGUCa- -3'
miRNA:   3'- cgCGC--UCGAG---UUCAGCG-GUAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 145322 0.66 0.990602
Target:  5'- gGUGcCGAGCgacacucgacaCAGGgCGCC-UCAUCUCg -3'
miRNA:   3'- -CGC-GCUCGa----------GUUCaGCGGuAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 171424 0.66 0.989324
Target:  5'- cGCGCGucgauCUCGAcucCGCCGUCGUCg- -3'
miRNA:   3'- -CGCGCuc---GAGUUca-GCGGUAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 167679 0.66 0.989324
Target:  5'- cCGCGAcGCgUCAGugaucGUCGCCGUCuccgagCUCu -3'
miRNA:   3'- cGCGCU-CG-AGUU-----CAGCGGUAGua----GAG- -5'
15894 3' -53.3 NC_004065.1 + 30878 0.66 0.989324
Target:  5'- -gGCGGGUUCGAG-CGCCcgCAgggCgUCg -3'
miRNA:   3'- cgCGCUCGAGUUCaGCGGuaGUa--G-AG- -5'
15894 3' -53.3 NC_004065.1 + 146720 0.66 0.989324
Target:  5'- cGCGCucgacgacgaGAGCUCc-GUCGCCcaCAUCUa -3'
miRNA:   3'- -CGCG----------CUCGAGuuCAGCGGuaGUAGAg -5'
15894 3' -53.3 NC_004065.1 + 60076 0.66 0.987914
Target:  5'- aCGCGGGC-CGcGcUCGUCGUCGUCg- -3'
miRNA:   3'- cGCGCUCGaGUuC-AGCGGUAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 193723 0.66 0.987914
Target:  5'- aGUGCGAucaGCgUCGAaggCGCCAUCGcCUCg -3'
miRNA:   3'- -CGCGCU---CG-AGUUca-GCGGUAGUaGAG- -5'
15894 3' -53.3 NC_004065.1 + 115901 0.66 0.987914
Target:  5'- cUGCG-GCUCGGG--GCCGUCGUCg- -3'
miRNA:   3'- cGCGCuCGAGUUCagCGGUAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 169324 0.66 0.987914
Target:  5'- cGUGaCGGGCgc-AG-CGCCAUCAccgUCUCg -3'
miRNA:   3'- -CGC-GCUCGaguUCaGCGGUAGU---AGAG- -5'
15894 3' -53.3 NC_004065.1 + 127099 0.66 0.987914
Target:  5'- gGCaGC-AGCUCc-GUCGCCGUCcaguUCUCc -3'
miRNA:   3'- -CG-CGcUCGAGuuCAGCGGUAGu---AGAG- -5'
15894 3' -53.3 NC_004065.1 + 18048 0.66 0.987914
Target:  5'- uGCGCGAGgUCGAGUC----UgAUCUCg -3'
miRNA:   3'- -CGCGCUCgAGUUCAGcgguAgUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 138964 0.66 0.987914
Target:  5'- uGCGCGucuGCgagaCcAGUCGCC-UCAUCg- -3'
miRNA:   3'- -CGCGCu--CGa---GuUCAGCGGuAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 128964 0.66 0.987766
Target:  5'- gGCGCGAGCUgGaauacguGGaCGCCAagAUCa- -3'
miRNA:   3'- -CGCGCUCGAgU-------UCaGCGGUagUAGag -5'
15894 3' -53.3 NC_004065.1 + 19321 0.66 0.986365
Target:  5'- gGCGuCGAaacGCUCGGGUcucCGCCGUacUCUCc -3'
miRNA:   3'- -CGC-GCU---CGAGUUCA---GCGGUAguAGAG- -5'
15894 3' -53.3 NC_004065.1 + 87637 0.66 0.984667
Target:  5'- aGCGCcAGCUCGGG-CGCaaaaGUUAUCg- -3'
miRNA:   3'- -CGCGcUCGAGUUCaGCGg---UAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 147643 0.66 0.984667
Target:  5'- cGgGCGAGaUCGAcugcGUCGCCAUCAa--- -3'
miRNA:   3'- -CgCGCUCgAGUU----CAGCGGUAGUagag -5'
15894 3' -53.3 NC_004065.1 + 224941 0.66 0.982814
Target:  5'- gGCGUcuccGAcGUagAGGUCGCUGUUAUCUCg -3'
miRNA:   3'- -CGCG----CU-CGagUUCAGCGGUAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 201365 0.66 0.982814
Target:  5'- uGCGCGAGCUgcgccucgcCGGGgggUGCCA-CGUCg- -3'
miRNA:   3'- -CGCGCUCGA---------GUUCa--GCGGUaGUAGag -5'
15894 3' -53.3 NC_004065.1 + 53853 0.66 0.982814
Target:  5'- cCGCc-GCc---GUCGCCAUCGUCUCa -3'
miRNA:   3'- cGCGcuCGaguuCAGCGGUAGUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.