miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15894 3' -53.3 NC_004065.1 + 36253 1.12 0.004977
Target:  5'- aGCGCGAGCUCAAGUCGCCAUCAUCUCu -3'
miRNA:   3'- -CGCGCUCGAGUUCAGCGGUAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 127262 0.85 0.219459
Target:  5'- aGCGCGAGCgauGGGUCGCCggCGUCUCu -3'
miRNA:   3'- -CGCGCUCGag-UUCAGCGGuaGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 132882 0.76 0.648652
Target:  5'- uGCGCG-GC-CAgagGGUCGCCuuGUCGUCUCu -3'
miRNA:   3'- -CGCGCuCGaGU---UCAGCGG--UAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 197689 0.76 0.648652
Target:  5'- aGCGgGAGCUCGucgaGCuCGUCAUCUCg -3'
miRNA:   3'- -CGCgCUCGAGUucagCG-GUAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 78866 0.75 0.668972
Target:  5'- gGCGCGccAGCUCGcGGUCGCCGacgaUCAUCg- -3'
miRNA:   3'- -CGCGC--UCGAGU-UCAGCGGU----AGUAGag -5'
15894 3' -53.3 NC_004065.1 + 43263 0.75 0.689174
Target:  5'- cGCGC-AGCUucucCAAGUCGUCGUCGUCg- -3'
miRNA:   3'- -CGCGcUCGA----GUUCAGCGGUAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 176056 0.74 0.728941
Target:  5'- cCGUGAGCUCGGGggcucuaCGCCGUCGUUa- -3'
miRNA:   3'- cGCGCUCGAGUUCa------GCGGUAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 28541 0.74 0.738699
Target:  5'- cCGCGGGCcgUCGGGUCGaCCGggAUCUCg -3'
miRNA:   3'- cGCGCUCG--AGUUCAGC-GGUagUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 189084 0.74 0.748364
Target:  5'- uGCGgGGGCUCGAGgaccUCGCCcggUGUCUCu -3'
miRNA:   3'- -CGCgCUCGAGUUC----AGCGGua-GUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 171588 0.74 0.748364
Target:  5'- -aGCGAGCUCGAGUucacCGCCAgcaaccgCAUCg- -3'
miRNA:   3'- cgCGCUCGAGUUCA----GCGGUa------GUAGag -5'
15894 3' -53.3 NC_004065.1 + 35105 0.74 0.756977
Target:  5'- uGUGCGAGCcgguguaUCGAGacggcggCGCCGUgGUCUCg -3'
miRNA:   3'- -CGCGCUCG-------AGUUCa------GCGGUAgUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 90906 0.73 0.785923
Target:  5'- aCGCGAGCUCGGagcagaccgcGUCGaCCGUCAugagcuggucccUCUCg -3'
miRNA:   3'- cGCGCUCGAGUU----------CAGC-GGUAGU------------AGAG- -5'
15894 3' -53.3 NC_004065.1 + 58621 0.73 0.785923
Target:  5'- cGCGCGcGGCg-GAGUCGCCG--GUCUCg -3'
miRNA:   3'- -CGCGC-UCGagUUCAGCGGUagUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 19782 0.72 0.821293
Target:  5'- uGgGC-AGUUCGAGUCGUCcgcgGUCGUCUCg -3'
miRNA:   3'- -CgCGcUCGAGUUCAGCGG----UAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 80473 0.72 0.846061
Target:  5'- aGCGCGAGUcggaCGAG-CGCCugucgCGUCUCu -3'
miRNA:   3'- -CGCGCUCGa---GUUCaGCGGua---GUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 120747 0.71 0.874208
Target:  5'- gGCGUGAcccaggacacugcuGCcgCGAGUCGUCAUCGUCa- -3'
miRNA:   3'- -CGCGCU--------------CGa-GUUCAGCGGUAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 165084 0.71 0.890243
Target:  5'- gGCgGUGGGUcagUAGG-CGCCGUCGUCUCu -3'
miRNA:   3'- -CG-CGCUCGa--GUUCaGCGGUAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 116726 0.7 0.896846
Target:  5'- cGCGCGAGCggc-GUCGCCcGUCAUg-- -3'
miRNA:   3'- -CGCGCUCGaguuCAGCGG-UAGUAgag -5'
15894 3' -53.3 NC_004065.1 + 219648 0.7 0.896846
Target:  5'- cGCGCGAGgUaCGAGUCGaggagagcCCAUUuUCUCa -3'
miRNA:   3'- -CGCGCUCgA-GUUCAGC--------GGUAGuAGAG- -5'
15894 3' -53.3 NC_004065.1 + 120567 0.7 0.903221
Target:  5'- gGCGCGAGCgggCGGGaccuccggCGCCG--GUCUCg -3'
miRNA:   3'- -CGCGCUCGa--GUUCa-------GCGGUagUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.