miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15894 3' -53.3 NC_004065.1 + 114889 0.66 0.982814
Target:  5'- -gGCG-GUUCc-GagGCCAUCAUCUCg -3'
miRNA:   3'- cgCGCuCGAGuuCagCGGUAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 160283 0.67 0.980796
Target:  5'- gGCGCGuGCU----UCGCCAggaUCGUUUCg -3'
miRNA:   3'- -CGCGCuCGAguucAGCGGU---AGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 64808 0.67 0.980796
Target:  5'- cCGUGAGCgugcugCGCCA-CAUCUCg -3'
miRNA:   3'- cGCGCUCGaguucaGCGGUaGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 202879 0.67 0.980158
Target:  5'- gGCGUGuguugcucggacccGGCUCGucGUUGUCAUCGUCgUCa -3'
miRNA:   3'- -CGCGC--------------UCGAGUu-CAGCGGUAGUAG-AG- -5'
15894 3' -53.3 NC_004065.1 + 88414 0.67 0.978607
Target:  5'- aGCaGCGAGCaaAAGuUCGCCAccUCGUC-Ca -3'
miRNA:   3'- -CG-CGCUCGagUUC-AGCGGU--AGUAGaG- -5'
15894 3' -53.3 NC_004065.1 + 124660 0.67 0.978607
Target:  5'- -aGCGAGUcCGGGUcCGCCGUCAg--- -3'
miRNA:   3'- cgCGCUCGaGUUCA-GCGGUAGUagag -5'
15894 3' -53.3 NC_004065.1 + 55652 0.67 0.978607
Target:  5'- -aGaCGGGCUCGAGUCGgCAcuggCcgGUCUCg -3'
miRNA:   3'- cgC-GCUCGAGUUCAGCgGUa---G--UAGAG- -5'
15894 3' -53.3 NC_004065.1 + 168350 0.67 0.978607
Target:  5'- cGCuGCGGaccccucgcGCUCuacacCGCCAUCGUCUCc -3'
miRNA:   3'- -CG-CGCU---------CGAGuuca-GCGGUAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 122827 0.67 0.976238
Target:  5'- uGCGCGAGU---AGUCGCg--CGUCUUg -3'
miRNA:   3'- -CGCGCUCGaguUCAGCGguaGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 47977 0.67 0.975991
Target:  5'- uUGCGAGCUCGauguccaagauagAGUCuCCAugacugcucagaUCGUCUCc -3'
miRNA:   3'- cGCGCUCGAGU-------------UCAGcGGU------------AGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 96648 0.67 0.970932
Target:  5'- uCGCGAGCUCuuucUCGgCGUCGgcgggCUCg -3'
miRNA:   3'- cGCGCUCGAGuuc-AGCgGUAGUa----GAG- -5'
15894 3' -53.3 NC_004065.1 + 111099 0.68 0.967983
Target:  5'- gGC-CGAGUUCAuguacGUCGCCAgcuUCGUCg- -3'
miRNA:   3'- -CGcGCUCGAGUu----CAGCGGU---AGUAGag -5'
15894 3' -53.3 NC_004065.1 + 48669 0.68 0.964827
Target:  5'- gGUGCcAGCUCAuGUCGCCAaCAagaucCUCg -3'
miRNA:   3'- -CGCGcUCGAGUuCAGCGGUaGUa----GAG- -5'
15894 3' -53.3 NC_004065.1 + 36367 0.68 0.964827
Target:  5'- -gGCGAGUgc--GUCGCUAUCGUCg- -3'
miRNA:   3'- cgCGCUCGaguuCAGCGGUAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 34196 0.68 0.961459
Target:  5'- -gGaCGGGCUCGAG-CGCCGUC-UCa- -3'
miRNA:   3'- cgC-GCUCGAGUUCaGCGGUAGuAGag -5'
15894 3' -53.3 NC_004065.1 + 196297 0.68 0.961459
Target:  5'- gGCGCuGGGC-CGAgccaccGUCGCCAUacaguacgcCAUCUCg -3'
miRNA:   3'- -CGCG-CUCGaGUU------CAGCGGUA---------GUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 10849 0.68 0.957874
Target:  5'- aGgGCGGGUgugucGGUCGCUGUCAuuaUCUCg -3'
miRNA:   3'- -CgCGCUCGagu--UCAGCGGUAGU---AGAG- -5'
15894 3' -53.3 NC_004065.1 + 146276 0.68 0.957874
Target:  5'- cGCGCGAGUUCc--UgGCCuUCGUCUUc -3'
miRNA:   3'- -CGCGCUCGAGuucAgCGGuAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 21578 0.69 0.950035
Target:  5'- aCGCGAGCgc-AGUCGCguuaGUCuUCUCg -3'
miRNA:   3'- cGCGCUCGaguUCAGCGg---UAGuAGAG- -5'
15894 3' -53.3 NC_004065.1 + 53889 0.69 0.950035
Target:  5'- gGCGCGAcgggaaacaGUUCGAGUCgGgCAUgAUCUCc -3'
miRNA:   3'- -CGCGCU---------CGAGUUCAG-CgGUAgUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.