miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15894 3' -53.3 NC_004065.1 + 10849 0.68 0.957874
Target:  5'- aGgGCGGGUgugucGGUCGCUGUCAuuaUCUCg -3'
miRNA:   3'- -CgCGCUCGagu--UCAGCGGUAGU---AGAG- -5'
15894 3' -53.3 NC_004065.1 + 18048 0.66 0.987914
Target:  5'- uGCGCGAGgUCGAGUC----UgAUCUCg -3'
miRNA:   3'- -CGCGCUCgAGUUCAGcgguAgUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 19321 0.66 0.986365
Target:  5'- gGCGuCGAaacGCUCGGGUcucCGCCGUacUCUCc -3'
miRNA:   3'- -CGC-GCU---CGAGUUCA---GCGGUAguAGAG- -5'
15894 3' -53.3 NC_004065.1 + 19782 0.72 0.821293
Target:  5'- uGgGC-AGUUCGAGUCGUCcgcgGUCGUCUCg -3'
miRNA:   3'- -CgCGcUCGAGUUCAGCGG----UAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 21578 0.69 0.950035
Target:  5'- aCGCGAGCgc-AGUCGCguuaGUCuUCUCg -3'
miRNA:   3'- cGCGCUCGaguUCAGCGg---UAGuAGAG- -5'
15894 3' -53.3 NC_004065.1 + 27471 0.69 0.935086
Target:  5'- cGCGCGAGCUCGGGUuccUGCCcgguguagugagcgGUCAg--- -3'
miRNA:   3'- -CGCGCUCGAGUUCA---GCGG--------------UAGUagag -5'
15894 3' -53.3 NC_004065.1 + 28541 0.74 0.738699
Target:  5'- cCGCGGGCcgUCGGGUCGaCCGggAUCUCg -3'
miRNA:   3'- cGCGCUCG--AGUUCAGC-GGUagUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 30878 0.66 0.989324
Target:  5'- -gGCGGGUUCGAG-CGCCcgCAgggCgUCg -3'
miRNA:   3'- cgCGCUCGAGUUCaGCGGuaGUa--G-AG- -5'
15894 3' -53.3 NC_004065.1 + 34196 0.68 0.961459
Target:  5'- -gGaCGGGCUCGAG-CGCCGUC-UCa- -3'
miRNA:   3'- cgC-GCUCGAGUUCaGCGGUAGuAGag -5'
15894 3' -53.3 NC_004065.1 + 35105 0.74 0.756977
Target:  5'- uGUGCGAGCcgguguaUCGAGacggcggCGCCGUgGUCUCg -3'
miRNA:   3'- -CGCGCUCG-------AGUUCa------GCGGUAgUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 36253 1.12 0.004977
Target:  5'- aGCGCGAGCUCAAGUCGCCAUCAUCUCu -3'
miRNA:   3'- -CGCGCUCGAGUUCAGCGGUAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 36367 0.68 0.964827
Target:  5'- -gGCGAGUgc--GUCGCUAUCGUCg- -3'
miRNA:   3'- cgCGCUCGaguuCAGCGGUAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 43263 0.75 0.689174
Target:  5'- cGCGC-AGCUucucCAAGUCGUCGUCGUCg- -3'
miRNA:   3'- -CGCGcUCGA----GUUCAGCGGUAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 47977 0.67 0.975991
Target:  5'- uUGCGAGCUCGauguccaagauagAGUCuCCAugacugcucagaUCGUCUCc -3'
miRNA:   3'- cGCGCUCGAGU-------------UCAGcGGU------------AGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 48669 0.68 0.964827
Target:  5'- gGUGCcAGCUCAuGUCGCCAaCAagaucCUCg -3'
miRNA:   3'- -CGCGcUCGAGUuCAGCGGUaGUa----GAG- -5'
15894 3' -53.3 NC_004065.1 + 53853 0.66 0.982814
Target:  5'- cCGCc-GCc---GUCGCCAUCGUCUCa -3'
miRNA:   3'- cGCGcuCGaguuCAGCGGUAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 53889 0.69 0.950035
Target:  5'- gGCGCGAcgggaaacaGUUCGAGUCgGgCAUgAUCUCc -3'
miRNA:   3'- -CGCGCU---------CGAGUUCAG-CgGUAgUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 55652 0.67 0.978607
Target:  5'- -aGaCGGGCUCGAGUCGgCAcuggCcgGUCUCg -3'
miRNA:   3'- cgC-GCUCGAGUUCAGCgGUa---G--UAGAG- -5'
15894 3' -53.3 NC_004065.1 + 58621 0.73 0.785923
Target:  5'- cGCGCGcGGCg-GAGUCGCCG--GUCUCg -3'
miRNA:   3'- -CGCGC-UCGagUUCAGCGGUagUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 60076 0.66 0.987914
Target:  5'- aCGCGGGC-CGcGcUCGUCGUCGUCg- -3'
miRNA:   3'- cGCGCUCGaGUuC-AGCGGUAGUAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.