miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15894 3' -53.3 NC_004065.1 + 36367 0.68 0.964827
Target:  5'- -gGCGAGUgc--GUCGCUAUCGUCg- -3'
miRNA:   3'- cgCGCUCGaguuCAGCGGUAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 128956 0.69 0.936551
Target:  5'- gGCGCGAGUUCucgGAGaugacUGCCGUCucgCUCa -3'
miRNA:   3'- -CGCGCUCGAG---UUCa----GCGGUAGua-GAG- -5'
15894 3' -53.3 NC_004065.1 + 206537 0.69 0.941279
Target:  5'- aGCGCGgacgcgaaucGGaCUCGGcGUCGUCAUCGUCg- -3'
miRNA:   3'- -CGCGC----------UC-GAGUU-CAGCGGUAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 92036 0.69 0.945773
Target:  5'- cCGCGGGCUCuuGGcgCGCUcgaggCAUCUCa -3'
miRNA:   3'- cGCGCUCGAGu-UCa-GCGGua---GUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 101144 0.69 0.945773
Target:  5'- cCGCGAGCcguUCAuGGUCGCCAUgAaaUCg -3'
miRNA:   3'- cGCGCUCG---AGU-UCAGCGGUAgUagAG- -5'
15894 3' -53.3 NC_004065.1 + 53889 0.69 0.950035
Target:  5'- gGCGCGAcgggaaacaGUUCGAGUCgGgCAUgAUCUCc -3'
miRNA:   3'- -CGCGCU---------CGAGUUCAG-CgGUAgUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 110848 0.69 0.950035
Target:  5'- gGCGCGGGCcgcccgcgUCGAaccGUCGCCAugccgacuUCAUCg- -3'
miRNA:   3'- -CGCGCUCG--------AGUU---CAGCGGU--------AGUAGag -5'
15894 3' -53.3 NC_004065.1 + 146276 0.68 0.957874
Target:  5'- cGCGCGAGUUCc--UgGCCuUCGUCUUc -3'
miRNA:   3'- -CGCGCUCGAGuucAgCGGuAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 34196 0.68 0.961459
Target:  5'- -gGaCGGGCUCGAG-CGCCGUC-UCa- -3'
miRNA:   3'- cgC-GCUCGAGUUCaGCGGUAGuAGag -5'
15894 3' -53.3 NC_004065.1 + 27471 0.69 0.935086
Target:  5'- cGCGCGAGCUCGGGUuccUGCCcgguguagugagcgGUCAg--- -3'
miRNA:   3'- -CGCGCUCGAGUUCA---GCGG--------------UAGUagag -5'
15894 3' -53.3 NC_004065.1 + 103646 0.69 0.931587
Target:  5'- uGCGCGAGCagGcGGUCGCCGUgCG-CUUc -3'
miRNA:   3'- -CGCGCUCGagU-UCAGCGGUA-GUaGAG- -5'
15894 3' -53.3 NC_004065.1 + 99972 0.69 0.931587
Target:  5'- cGCgGCGuGCUCGGGcCGCggguCGUCGUCUUc -3'
miRNA:   3'- -CG-CGCuCGAGUUCaGCG----GUAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 132882 0.76 0.648652
Target:  5'- uGCGCG-GC-CAgagGGUCGCCuuGUCGUCUCu -3'
miRNA:   3'- -CGCGCuCGaGU---UCAGCGG--UAGUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 43263 0.75 0.689174
Target:  5'- cGCGC-AGCUucucCAAGUCGUCGUCGUCg- -3'
miRNA:   3'- -CGCGcUCGA----GUUCAGCGGUAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 58621 0.73 0.785923
Target:  5'- cGCGCGcGGCg-GAGUCGCCG--GUCUCg -3'
miRNA:   3'- -CGCGC-UCGagUUCAGCGGUagUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 90906 0.73 0.785923
Target:  5'- aCGCGAGCUCGGagcagaccgcGUCGaCCGUCAugagcuggucccUCUCg -3'
miRNA:   3'- cGCGCUCGAGUU----------CAGC-GGUAGU------------AGAG- -5'
15894 3' -53.3 NC_004065.1 + 120567 0.7 0.903221
Target:  5'- gGCGCGAGCgggCGGGaccuccggCGCCG--GUCUCg -3'
miRNA:   3'- -CGCGCUCGa--GUUCa-------GCGGUagUAGAG- -5'
15894 3' -53.3 NC_004065.1 + 133676 0.7 0.920949
Target:  5'- -gGCGAGCUCAGGaagGCCggCAUCg- -3'
miRNA:   3'- cgCGCUCGAGUUCag-CGGuaGUAGag -5'
15894 3' -53.3 NC_004065.1 + 66554 0.69 0.926386
Target:  5'- cGCGCG-GCgugCGAGUCGUUcUCGUCg- -3'
miRNA:   3'- -CGCGCuCGa--GUUCAGCGGuAGUAGag -5'
15894 3' -53.3 NC_004065.1 + 119254 0.69 0.931587
Target:  5'- -gGCGAGUUUcucugCGCCGUCAUCUg -3'
miRNA:   3'- cgCGCUCGAGuuca-GCGGUAGUAGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.