miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15894 5' -58.3 NC_004065.1 + 48106 0.66 0.921637
Target:  5'- gCGGcGGCGGUGGCGg---CGGCGgUGg -3'
miRNA:   3'- gGCU-CCGCUACCGCggaaGCUGCgAC- -5'
15894 5' -58.3 NC_004065.1 + 176173 0.66 0.921637
Target:  5'- gCUGAGaCGAUGGCGaCggCGGCGgaGg -3'
miRNA:   3'- -GGCUCcGCUACCGCgGaaGCUGCgaC- -5'
15894 5' -58.3 NC_004065.1 + 101425 0.66 0.921637
Target:  5'- -gGGGGCGGcUGGCgcgugcggaugcGCCUUCGcCGCc- -3'
miRNA:   3'- ggCUCCGCU-ACCG------------CGGAAGCuGCGac -5'
15894 5' -58.3 NC_004065.1 + 35120 0.66 0.921637
Target:  5'- aUCGAGaCGgcGGCGCCguggucUCGAUGCc- -3'
miRNA:   3'- -GGCUCcGCuaCCGCGGa-----AGCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 108780 0.66 0.921637
Target:  5'- aCCaGAGGUGgcGGCGUCgaaccuggCGugGCg- -3'
miRNA:   3'- -GG-CUCCGCuaCCGCGGaa------GCugCGac -5'
15894 5' -58.3 NC_004065.1 + 160612 0.66 0.921637
Target:  5'- gUCGGcGCGcaccUGGCGCCccgUCGGCaGCUGu -3'
miRNA:   3'- -GGCUcCGCu---ACCGCGGa--AGCUG-CGAC- -5'
15894 5' -58.3 NC_004065.1 + 226106 0.66 0.920045
Target:  5'- gCCGAacgauucgaaagcaGGCGggGGuCGCCgcgUgGAgGCUGg -3'
miRNA:   3'- -GGCU--------------CCGCuaCC-GCGGa--AgCUgCGAC- -5'
15894 5' -58.3 NC_004065.1 + 176618 0.66 0.916255
Target:  5'- aCGAGGaugauaGcgGGCGCC--CGGCGCc- -3'
miRNA:   3'- gGCUCCg-----CuaCCGCGGaaGCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 208274 0.66 0.916255
Target:  5'- gCCGAGGa---GGCGCUgaCGACGUa- -3'
miRNA:   3'- -GGCUCCgcuaCCGCGGaaGCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 87080 0.66 0.916255
Target:  5'- gCGAGGUGGgcagcuggcccUGGUGCCggaacUCGACGg-- -3'
miRNA:   3'- gGCUCCGCU-----------ACCGCGGa----AGCUGCgac -5'
15894 5' -58.3 NC_004065.1 + 181207 0.66 0.916255
Target:  5'- gUGAGaG-GAUGGUGCCgUUCGGCcgGCUGc -3'
miRNA:   3'- gGCUC-CgCUACCGCGG-AAGCUG--CGAC- -5'
15894 5' -58.3 NC_004065.1 + 153348 0.66 0.910659
Target:  5'- uUCGGGGaCGgcGGCGCC---GACGCg- -3'
miRNA:   3'- -GGCUCC-GCuaCCGCGGaagCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 121098 0.66 0.904849
Target:  5'- gCCGcAGGCGcagcGCGCUUUCGuCGCg- -3'
miRNA:   3'- -GGC-UCCGCuac-CGCGGAAGCuGCGac -5'
15894 5' -58.3 NC_004065.1 + 144345 0.66 0.904849
Target:  5'- aUGGGGUacAUGGCGCCgcaGACGCc- -3'
miRNA:   3'- gGCUCCGc-UACCGCGGaagCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 96771 0.66 0.904849
Target:  5'- gCgGAGGCGGcaucgcGGcCGUCUUCGACGaCUc -3'
miRNA:   3'- -GgCUCCGCUa-----CC-GCGGAAGCUGC-GAc -5'
15894 5' -58.3 NC_004065.1 + 88451 0.66 0.899439
Target:  5'- gCCG-GGCGAgGGCGUCgcaggucuugcgcgCGACGCc- -3'
miRNA:   3'- -GGCuCCGCUaCCGCGGaa------------GCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 27270 0.66 0.898827
Target:  5'- aCGAGGaCGAagagaccggcGGCGCCgccgaCGACGCg- -3'
miRNA:   3'- gGCUCC-GCUa---------CCGCGGaa---GCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 75478 0.66 0.898827
Target:  5'- aCGAgGGCGAUGGCGgCggCGaggaucaggGCGCa- -3'
miRNA:   3'- gGCU-CCGCUACCGCgGaaGC---------UGCGac -5'
15894 5' -58.3 NC_004065.1 + 208001 0.66 0.898827
Target:  5'- cCCGGGGCcGUGGCcggguuaguGCCggCGGCGaUGa -3'
miRNA:   3'- -GGCUCCGcUACCG---------CGGaaGCUGCgAC- -5'
15894 5' -58.3 NC_004065.1 + 136628 0.66 0.898827
Target:  5'- uCCGAGGCGgcGGU-CCggagCGGCGUg- -3'
miRNA:   3'- -GGCUCCGCuaCCGcGGaa--GCUGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.