miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15894 5' -58.3 NC_004065.1 + 36292 1.1 0.002706
Target:  5'- gCCGAGGCGAUGGCGCCUUCGACGCUGa -3'
miRNA:   3'- -GGCUCCGCUACCGCGGAAGCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 59738 0.77 0.351663
Target:  5'- cCCGGcGGCGAUGGUGCCgaccgCGugGCc- -3'
miRNA:   3'- -GGCU-CCGCUACCGCGGaa---GCugCGac -5'
15894 5' -58.3 NC_004065.1 + 202006 0.77 0.374438
Target:  5'- gCCGccaacGCGAUGGCGuCCUccUCGGCGCUGu -3'
miRNA:   3'- -GGCuc---CGCUACCGC-GGA--AGCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 104604 0.75 0.457207
Target:  5'- cCCGAGGCGcUGGCGCCggcCGACu--- -3'
miRNA:   3'- -GGCUCCGCuACCGCGGaa-GCUGcgac -5'
15894 5' -58.3 NC_004065.1 + 55431 0.74 0.483898
Target:  5'- uCCGGGGCGcgGGUcuUCgagUCGGCGCUGg -3'
miRNA:   3'- -GGCUCCGCuaCCGc-GGa--AGCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 117012 0.74 0.490234
Target:  5'- aCGAGGCGAUGcGCGCUcacgugccgaccgaGACGCUGc -3'
miRNA:   3'- gGCUCCGCUAC-CGCGGaag-----------CUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 157002 0.74 0.492961
Target:  5'- aCGAGGUGAagGGCGUCUcgcUCGugGCg- -3'
miRNA:   3'- gGCUCCGCUa-CCGCGGA---AGCugCGac -5'
15894 5' -58.3 NC_004065.1 + 145455 0.74 0.492961
Target:  5'- -aGAGGCGAUGGCGUCg--GGgGCUGc -3'
miRNA:   3'- ggCUCCGCUACCGCGGaagCUgCGAC- -5'
15894 5' -58.3 NC_004065.1 + 225382 0.73 0.529945
Target:  5'- cCCGcGGCGggGGCGCU---GGCGCUGa -3'
miRNA:   3'- -GGCuCCGCuaCCGCGGaagCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 83986 0.73 0.548819
Target:  5'- uCCucGGUcGUGGCGCCUUCGGCGaugaUGg -3'
miRNA:   3'- -GGcuCCGcUACCGCGGAAGCUGCg---AC- -5'
15894 5' -58.3 NC_004065.1 + 66125 0.73 0.558335
Target:  5'- aCCGAGGCGcUGGCGCgCUgggccgcggacCGGCGCc- -3'
miRNA:   3'- -GGCUCCGCuACCGCG-GAa----------GCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 67497 0.73 0.566939
Target:  5'- aCCGAGGCGAUcucGGCGCugucguuCUUCGGgGCc- -3'
miRNA:   3'- -GGCUCCGCUA---CCGCG-------GAAGCUgCGac -5'
15894 5' -58.3 NC_004065.1 + 70497 0.73 0.567897
Target:  5'- aCCGugaAGGCGAUGGCGgcgcCCUucUCGACGgaGc -3'
miRNA:   3'- -GGC---UCCGCUACCGC----GGA--AGCUGCgaC- -5'
15894 5' -58.3 NC_004065.1 + 101251 0.73 0.567897
Target:  5'- gCCGccGGCGAcGGCGCCcUCaACGCUGc -3'
miRNA:   3'- -GGCu-CCGCUaCCGCGGaAGcUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 164827 0.72 0.584243
Target:  5'- cCCGAGGCGGUagaacgcccGCGUCUUCucgaucacgucuuuGACGCUGa -3'
miRNA:   3'- -GGCUCCGCUAc--------CGCGGAAG--------------CUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 130800 0.72 0.587138
Target:  5'- gCGAGGCGGau-CGCCUggcCGGCGCUGu -3'
miRNA:   3'- gGCUCCGCUaccGCGGAa--GCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 140145 0.72 0.587138
Target:  5'- uUCGGGGCcgacGAUGGCGCCgUCGACa--- -3'
miRNA:   3'- -GGCUCCG----CUACCGCGGaAGCUGcgac -5'
15894 5' -58.3 NC_004065.1 + 104907 0.72 0.606496
Target:  5'- aCGGcGCGGUGGUGCCggCGGCGUa- -3'
miRNA:   3'- gGCUcCGCUACCGCGGaaGCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 161021 0.72 0.633701
Target:  5'- aCGAGGCGGcaucgacgugcaGGgGCCggUCGACGCUa -3'
miRNA:   3'- gGCUCCGCUa-----------CCgCGGa-AGCUGCGAc -5'
15894 5' -58.3 NC_004065.1 + 45977 0.71 0.655078
Target:  5'- gCCGuguguaacGGCGAccugGGCGCCguggCGGCGUUGa -3'
miRNA:   3'- -GGCu-------CCGCUa---CCGCGGaa--GCUGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.