miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15894 5' -58.3 NC_004065.1 + 130010 0.66 0.898214
Target:  5'- aCGAGGCGAUgcuguacggcggcGGCGgCUaCGACGaaGa -3'
miRNA:   3'- gGCUCCGCUA-------------CCGCgGAaGCUGCgaC- -5'
15894 5' -58.3 NC_004065.1 + 4407 0.66 0.892597
Target:  5'- uUCGGaGCGGUGGCcacggcggGCCU--GACGCUGa -3'
miRNA:   3'- -GGCUcCGCUACCG--------CGGAagCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 28399 0.66 0.892597
Target:  5'- aCCGGGGUGuuccacggGGCGCagcuccugguCUUCGACGaCUc -3'
miRNA:   3'- -GGCUCCGCua------CCGCG----------GAAGCUGC-GAc -5'
15894 5' -58.3 NC_004065.1 + 196808 0.67 0.886161
Target:  5'- aCGAGGCGGUGGgGgg-UCGugGUc- -3'
miRNA:   3'- gGCUCCGCUACCgCggaAGCugCGac -5'
15894 5' -58.3 NC_004065.1 + 872 0.67 0.886161
Target:  5'- gCCG-GGCGAgGGCGCCccgcCGGCauGCUa -3'
miRNA:   3'- -GGCuCCGCUaCCGCGGaa--GCUG--CGAc -5'
15894 5' -58.3 NC_004065.1 + 109964 0.67 0.882202
Target:  5'- uCCGGcGCGGucuccgacgacguccUGGCGCUcUgGACGCUGc -3'
miRNA:   3'- -GGCUcCGCU---------------ACCGCGGaAgCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 81708 0.67 0.879522
Target:  5'- aCCGuGGGCGAccUGGCGgCCga-GGUGCUGa -3'
miRNA:   3'- -GGC-UCCGCU--ACCGC-GGaagCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 184818 0.67 0.879522
Target:  5'- aCGGuGGCGGUGGCGgCagcggCGGCGUg- -3'
miRNA:   3'- gGCU-CCGCUACCGCgGaa---GCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 62365 0.67 0.879522
Target:  5'- uUCGAcGGCGGUGGCGgCgggggUgGugGCg- -3'
miRNA:   3'- -GGCU-CCGCUACCGCgGa----AgCugCGac -5'
15894 5' -58.3 NC_004065.1 + 106133 0.67 0.879522
Target:  5'- aCGGGGCGAcgacgugcacGGCGCaccugCGGCGCg- -3'
miRNA:   3'- gGCUCCGCUa---------CCGCGgaa--GCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 67464 0.67 0.872684
Target:  5'- gCCGAGGCGgcGGUGUacgugugCGACGaCUu -3'
miRNA:   3'- -GGCUCCGCuaCCGCGgaa----GCUGC-GAc -5'
15894 5' -58.3 NC_004065.1 + 42057 0.67 0.872684
Target:  5'- ---cGGCGugcUGGCGCUggUGugGCUGa -3'
miRNA:   3'- ggcuCCGCu--ACCGCGGaaGCugCGAC- -5'
15894 5' -58.3 NC_004065.1 + 57464 0.67 0.865652
Target:  5'- gUCGuGGCGAUGGCGCgg-CGGUGgUGg -3'
miRNA:   3'- -GGCuCCGCUACCGCGgaaGCUGCgAC- -5'
15894 5' -58.3 NC_004065.1 + 65230 0.67 0.865652
Target:  5'- ---cGGCGGUGGCGCCcgucUCGACa--- -3'
miRNA:   3'- ggcuCCGCUACCGCGGa---AGCUGcgac -5'
15894 5' -58.3 NC_004065.1 + 189758 0.67 0.865652
Target:  5'- aUGAGgauuGCGGUGGCGgCagUgGACGCUGu -3'
miRNA:   3'- gGCUC----CGCUACCGCgGa-AgCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 59559 0.67 0.861341
Target:  5'- gCCGAGcggucugcggcggcaGCGAaGGCGCCUccggCGGCGUc- -3'
miRNA:   3'- -GGCUC---------------CGCUaCCGCGGAa---GCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 69136 0.67 0.85843
Target:  5'- gCCGAcaaGGUGcUGGggaaGCUgUCGACGCUGg -3'
miRNA:   3'- -GGCU---CCGCuACCg---CGGaAGCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 66769 0.67 0.85843
Target:  5'- -gGAGGCGccGGCGCCgc---CGCUGc -3'
miRNA:   3'- ggCUCCGCuaCCGCGGaagcuGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 208782 0.67 0.851023
Target:  5'- aCCGAcauGCGAUGuCGCCUcuUCGGCGUa- -3'
miRNA:   3'- -GGCUc--CGCUACcGCGGA--AGCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 116307 0.67 0.851023
Target:  5'- uCCGAGGUGucGGCGUCggCGGCGg-- -3'
miRNA:   3'- -GGCUCCGCuaCCGCGGaaGCUGCgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.